Protein–RNA interactions for Protein: Q3UDK1

Trafd1, TRAF-type zinc finger domain-containing protein 1, mousemouse

Predictions only

Length 580 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trafd1Q3UDK1 Srrm4os-201ENSMUST00000126959 3360 ntTSL 1 (best) BASIC6.89□□□□□ -1.31
Trafd1Q3UDK1 Ktn1-202ENSMUST00000185343 3846 ntAPPRIS ALT2 TSL 5 BASIC6.89□□□□□ -1.31
Trafd1Q3UDK1 Ktn1-205ENSMUST00000186627 3840 ntAPPRIS ALT2 TSL 5 BASIC6.89□□□□□ -1.31
Trafd1Q3UDK1 Ktn1-213ENSMUST00000188330 3819 ntAPPRIS ALT2 TSL 5 BASIC6.89□□□□□ -1.31
Trafd1Q3UDK1 Atf2-203ENSMUST00000100009 3936 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.31
Trafd1Q3UDK1 Prrg1-201ENSMUST00000114024 3900 ntAPPRIS P1 TSL 2 BASIC6.89□□□□□ -1.31
Trafd1Q3UDK1 Sbf2-208ENSMUST00000166020 5481 ntAPPRIS ALT2 TSL 5 BASIC6.89□□□□□ -1.31
Trafd1Q3UDK1 Celf2-226ENSMUST00000183209 3852 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
Trafd1Q3UDK1 2610203C20Rik-204ENSMUST00000181214 3525 ntTSL 5 BASIC6.88□□□□□ -1.31
Trafd1Q3UDK1 CT009480.2-201ENSMUST00000225152 3369 ntBASIC6.88□□□□□ -1.31
Trafd1Q3UDK1 CAAA01119292.1-201ENSMUST00000226763 2766 ntBASIC6.88□□□□□ -1.31
Trafd1Q3UDK1 Parp6-202ENSMUST00000050483 2631 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
Trafd1Q3UDK1 Pde1c-208ENSMUST00000170774 2132 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
Trafd1Q3UDK1 Olfr1340-202ENSMUST00000213436 1948 ntAPPRIS P1 TSL 5 BASIC6.88□□□□□ -1.31
Trafd1Q3UDK1 Il15ra-210ENSMUST00000128156 1624 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
Trafd1Q3UDK1 Gm15448-201ENSMUST00000094911 1557 ntTSL 5 BASIC6.88□□□□□ -1.31
Trafd1Q3UDK1 AC162301.1-201ENSMUST00000228785 1542 ntBASIC6.88□□□□□ -1.31
Trafd1Q3UDK1 Gm28440-201ENSMUST00000186328 1499 ntTSL 5 BASIC6.88□□□□□ -1.31
Trafd1Q3UDK1 Copa-201ENSMUST00000027833 4351 ntTSL 5 BASIC6.88□□□□□ -1.31
Trafd1Q3UDK1 Gm13749-201ENSMUST00000133244 1432 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
Trafd1Q3UDK1 AC124421.1-201ENSMUST00000219114 4154 ntBASIC6.88□□□□□ -1.31
Trafd1Q3UDK1 Zfp804b-201ENSMUST00000164784 3924 ntTSL 5 BASIC6.88□□□□□ -1.31
Trafd1Q3UDK1 Gm12879-201ENSMUST00000120003 1182 ntBASIC6.88□□□□□ -1.31
Trafd1Q3UDK1 9630013K17Rik-201ENSMUST00000146915 1072 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
Trafd1Q3UDK1 Gm11697-201ENSMUST00000149226 525 ntTSL 2 BASIC6.88□□□□□ -1.31
Trafd1Q3UDK1 4930445N08Rik-201ENSMUST00000156925 313 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
Trafd1Q3UDK1 Fam47e-207ENSMUST00000176621 746 ntTSL 3 BASIC6.88□□□□□ -1.31
Trafd1Q3UDK1 Rpp14-202ENSMUST00000180369 477 ntAPPRIS P1 BASIC6.88□□□□□ -1.31
Trafd1Q3UDK1 Gm18848-201ENSMUST00000182069 792 ntBASIC6.88□□□□□ -1.31
Trafd1Q3UDK1 Gm27185-201ENSMUST00000184296 247 ntBASIC6.88□□□□□ -1.31
Trafd1Q3UDK1 Gm9999-202ENSMUST00000185832 335 ntAPPRIS ALT2 TSL 1 (best) BASIC6.88□□□□□ -1.31
Trafd1Q3UDK1 1700054A03Rik-201ENSMUST00000187368 780 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
Trafd1Q3UDK1 Gm28070-201ENSMUST00000191502 445 ntBASIC6.88□□□□□ -1.31
Trafd1Q3UDK1 4930590H14Rik-201ENSMUST00000193999 551 ntBASIC6.88□□□□□ -1.31
Trafd1Q3UDK1 Gm17833-201ENSMUST00000197629 1065 ntBASIC6.88□□□□□ -1.31
Trafd1Q3UDK1 Mrln-201ENSMUST00000020090 443 ntAPPRIS P1 TSL 2 BASIC6.88□□□□□ -1.31
Trafd1Q3UDK1 Gm21048-201ENSMUST00000202470 1166 ntBASIC6.88□□□□□ -1.31
Trafd1Q3UDK1 Gm44590-201ENSMUST00000206161 391 ntBASIC6.88□□□□□ -1.31
Trafd1Q3UDK1 4933402C06Rik-203ENSMUST00000207559 1227 ntTSL 5 BASIC6.88□□□□□ -1.31
Trafd1Q3UDK1 Gm29154-253ENSMUST00000217229 1207 ntTSL 5 BASIC6.88□□□□□ -1.31
Trafd1Q3UDK1 AC127224.1-201ENSMUST00000218094 453 ntBASIC6.88□□□□□ -1.31
Trafd1Q3UDK1 AC122539.1-201ENSMUST00000219925 329 ntBASIC6.88□□□□□ -1.31
Trafd1Q3UDK1 Gm35638-201ENSMUST00000220724 652 ntBASIC6.88□□□□□ -1.31
Trafd1Q3UDK1 Gm7712-201ENSMUST00000222214 337 ntTSL 5 BASIC6.88□□□□□ -1.31
Trafd1Q3UDK1 3300002A11Rik-201ENSMUST00000046994 654 ntTSL 1 (best) BASIC6.88□□□□□ -1.31
Trafd1Q3UDK1 Nsd2-202ENSMUST00000066854 6919 ntAPPRIS P4 TSL 2 BASIC6.88□□□□□ -1.31
Trafd1Q3UDK1 AC107763.1-202ENSMUST00000225021 2663 ntBASIC6.88□□□□□ -1.31
Trafd1Q3UDK1 Olfr1386-202ENSMUST00000204518 2553 ntAPPRIS P1 TSL 3 BASIC6.88□□□□□ -1.31
Trafd1Q3UDK1 Olfr1426-205ENSMUST00000219155 2503 ntAPPRIS P1 TSL 5 BASIC6.88□□□□□ -1.31
Trafd1Q3UDK1 Stra6l-201ENSMUST00000030011 3606 ntAPPRIS P3 TSL 1 (best) BASIC6.88□□□□□ -1.31
Trafd1Q3UDK1 Serpinb1a-201ENSMUST00000076352 1918 ntAPPRIS P1 TSL 1 (best) BASIC6.88□□□□□ -1.31
Trafd1Q3UDK1 Ugt2b34-201ENSMUST00000031181 3051 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
Trafd1Q3UDK1 Gm43421-201ENSMUST00000200044 2905 ntBASIC6.87□□□□□ -1.31
Trafd1Q3UDK1 Synb-201ENSMUST00000059362 4055 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
Trafd1Q3UDK1 Aktip-204ENSMUST00000120426 1687 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
Trafd1Q3UDK1 Osbpl9-214ENSMUST00000160774 2765 ntTSL 5 BASIC6.87□□□□□ -1.31
Trafd1Q3UDK1 Slc25a40-202ENSMUST00000170496 2602 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
Trafd1Q3UDK1 Tbp-211ENSMUST00000162505 12794 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
Trafd1Q3UDK1 Slc22a8-201ENSMUST00000010251 3478 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
Trafd1Q3UDK1 Atp13a4-202ENSMUST00000057018 4054 ntAPPRIS ALT2 TSL 1 (best) BASIC6.87□□□□□ -1.31
Trafd1Q3UDK1 Gm19024-201ENSMUST00000194681 1319 ntBASIC6.87□□□□□ -1.31
Trafd1Q3UDK1 Actl11-201ENSMUST00000085073 3993 ntAPPRIS P1 BASIC6.87□□□□□ -1.31
Trafd1Q3UDK1 Gm25757-201ENSMUST00000103986 123 ntBASIC6.87□□□□□ -1.31
Trafd1Q3UDK1 Homer1-209ENSMUST00000109496 772 ntTSL 5 BASIC6.87□□□□□ -1.31
Trafd1Q3UDK1 Vgll1-202ENSMUST00000114745 1218 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
Trafd1Q3UDK1 Gm14279-201ENSMUST00000117142 332 ntBASIC6.87□□□□□ -1.31
Trafd1Q3UDK1 Rpl35a-ps2-201ENSMUST00000117444 333 ntBASIC6.87□□□□□ -1.31
Trafd1Q3UDK1 Gm10243-201ENSMUST00000117571 333 ntBASIC6.87□□□□□ -1.31
Trafd1Q3UDK1 Gm13196-201ENSMUST00000118297 379 ntBASIC6.87□□□□□ -1.31
Trafd1Q3UDK1 Gm11198-201ENSMUST00000119771 974 ntBASIC6.87□□□□□ -1.31
Trafd1Q3UDK1 Rpl35a-ps4-201ENSMUST00000121779 333 ntBASIC6.87□□□□□ -1.31
Trafd1Q3UDK1 Rpl35a-ps3-201ENSMUST00000147311 333 ntBASIC6.87□□□□□ -1.31
Trafd1Q3UDK1 Rpl35a-ps6-201ENSMUST00000148282 333 ntBASIC6.87□□□□□ -1.31
Trafd1Q3UDK1 Gm12718-202ENSMUST00000156144 660 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
Trafd1Q3UDK1 Gm2976-201ENSMUST00000160362 513 ntBASIC6.87□□□□□ -1.31
Trafd1Q3UDK1 Gm6434-201ENSMUST00000163316 372 ntBASIC6.87□□□□□ -1.31
Trafd1Q3UDK1 Gm5656-201ENSMUST00000171020 1096 ntBASIC6.87□□□□□ -1.31
Trafd1Q3UDK1 Tshb-203ENSMUST00000172026 604 ntAPPRIS P1 TSL 5 BASIC6.87□□□□□ -1.31
Trafd1Q3UDK1 Cers6-206ENSMUST00000176018 1279 ntAPPRIS ALT1 TSL 5 BASIC6.87□□□□□ -1.31
Trafd1Q3UDK1 Gm21839-201ENSMUST00000179536 378 ntBASIC6.87□□□□□ -1.31
Trafd1Q3UDK1 Gm7481-201ENSMUST00000182020 995 ntBASIC6.87□□□□□ -1.31
Trafd1Q3UDK1 Gm18501-201ENSMUST00000185363 664 ntBASIC6.87□□□□□ -1.31
Trafd1Q3UDK1 Gm28425-202ENSMUST00000191542 621 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
Trafd1Q3UDK1 Gm18430-201ENSMUST00000197534 682 ntBASIC6.87□□□□□ -1.31
Trafd1Q3UDK1 Gm30735-201ENSMUST00000199488 726 ntTSL 3 BASIC6.87□□□□□ -1.31
Trafd1Q3UDK1 Gm9419-201ENSMUST00000200672 567 ntBASIC6.87□□□□□ -1.31
Trafd1Q3UDK1 Gm45045-201ENSMUST00000207368 218 ntTSL 5 BASIC6.87□□□□□ -1.31
Trafd1Q3UDK1 Gm31659-201ENSMUST00000211989 481 ntTSL 3 BASIC6.87□□□□□ -1.31
Trafd1Q3UDK1 Olfr1312-204ENSMUST00000215531 2975 ntAPPRIS P1 TSL 5 BASIC6.87□□□□□ -1.31
Trafd1Q3UDK1 Gm8275-201ENSMUST00000219732 424 ntBASIC6.87□□□□□ -1.31
Trafd1Q3UDK1 Gm34047-201ENSMUST00000223547 606 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
Trafd1Q3UDK1 AL837512.1-201ENSMUST00000223914 1073 ntBASIC6.87□□□□□ -1.31
Trafd1Q3UDK1 AC131117.2-202ENSMUST00000224539 547 ntBASIC6.87□□□□□ -1.31
Trafd1Q3UDK1 AC154806.5-204ENSMUST00000228900 867 ntBASIC6.87□□□□□ -1.31
Trafd1Q3UDK1 Gm10247-201ENSMUST00000090395 333 ntBASIC6.87□□□□□ -1.31
Trafd1Q3UDK1 Gm13043-201ENSMUST00000178489 2055 ntAPPRIS P1 TSL 1 (best) BASIC6.87□□□□□ -1.31
Trafd1Q3UDK1 Psg21-202ENSMUST00000182128 2066 ntTSL 1 (best) BASIC6.87□□□□□ -1.31
Trafd1Q3UDK1 Med12-201ENSMUST00000087948 6809 ntAPPRIS P2 TSL 1 (best) BASIC6.87□□□□□ -1.31
Trafd1Q3UDK1 Trpm3-202ENSMUST00000074770 6710 ntAPPRIS ALT2 TSL 1 (best) BASIC6.87□□□□□ -1.31
Trafd1Q3UDK1 Olfr600-202ENSMUST00000215042 3527 ntAPPRIS P1 TSL 5 BASIC6.87□□□□□ -1.31
Retrieved 100 of 76,532 protein–RNA pairs in 116.5 ms