Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 AC121542.2-201ENSMUST00000227529 400 ntBASIC8.21□□□□□ -1.1
Traf1P39428 Cst8-201ENSMUST00000028931 768 ntAPPRIS P1 TSL 1 (best) BASIC8.21□□□□□ -1.1
Traf1P39428 Gm9800-201ENSMUST00000052615 336 ntBASIC8.21□□□□□ -1.1
Traf1P39428 Olfr13-201ENSMUST00000059512 1054 ntAPPRIS P1 BASIC8.21□□□□□ -1.1
Traf1P39428 Gm2531-201ENSMUST00000075609 512 ntBASIC8.21□□□□□ -1.1
Traf1P39428 Gm45250-201ENSMUST00000209414 3592 ntBASIC8.21□□□□□ -1.1
Traf1P39428 Mkl2-204ENSMUST00000149359 8295 ntAPPRIS P3 TSL 1 (best) BASIC8.21□□□□□ -1.1
Traf1P39428 Hibch-201ENSMUST00000044478 1830 ntAPPRIS P1 TSL 1 (best) BASIC8.21□□□□□ -1.1
Traf1P39428 Hipk3-203ENSMUST00000111125 3651 ntTSL 5 BASIC8.21□□□□□ -1.1
Traf1P39428 Olfr727-202ENSMUST00000215317 2616 ntAPPRIS P1 TSL 5 BASIC8.21□□□□□ -1.1
Traf1P39428 Eya4-202ENSMUST00000092665 5304 ntAPPRIS P2 TSL 1 (best) BASIC8.21□□□□□ -1.1
Traf1P39428 AC131667.1-201ENSMUST00000214665 2175 ntBASIC8.21□□□□□ -1.1
Traf1P39428 Gm20754-202ENSMUST00000192642 1357 ntTSL 1 (best) BASIC8.21□□□□□ -1.1
Traf1P39428 Arid5b-203ENSMUST00000218532 3025 ntAPPRIS ALT2 TSL 1 (best) BASIC8.21□□□□□ -1.1
Traf1P39428 Mcm4-201ENSMUST00000023353 3589 ntAPPRIS P1 TSL 1 (best) BASIC8.21□□□□□ -1.1
Traf1P39428 Pcbp2-203ENSMUST00000108838 2775 ntAPPRIS ALT1 TSL 2 BASIC8.21□□□□□ -1.1
Traf1P39428 Gm6558-201ENSMUST00000191934 1973 ntBASIC8.21□□□□□ -1.1
Traf1P39428 Vmn1r196-203ENSMUST00000227516 5122 ntBASIC8.2□□□□□ -1.1
Traf1P39428 Patj-204ENSMUST00000107029 4342 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
Traf1P39428 5430427O19Rik-201ENSMUST00000113976 3754 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
Traf1P39428 Rapgef5-201ENSMUST00000109691 6746 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
Traf1P39428 Nup93-203ENSMUST00000211822 2674 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
Traf1P39428 Impg2-202ENSMUST00000069936 6890 ntAPPRIS P2 TSL 1 (best) BASIC8.2□□□□□ -1.1
Traf1P39428 Slc4a10-202ENSMUST00000102735 5482 ntAPPRIS P3 TSL 1 (best) BASIC8.2□□□□□ -1.1
Traf1P39428 Vip-201ENSMUST00000019906 1530 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
Traf1P39428 Rnase4-201ENSMUST00000022428 1518 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
Traf1P39428 Gm15169-201ENSMUST00000126095 2753 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
Traf1P39428 Pcdhb13-201ENSMUST00000056915 3710 ntAPPRIS P1 BASIC8.2□□□□□ -1.1
Traf1P39428 Olfr480-202ENSMUST00000217653 1876 ntAPPRIS P1 TSL 3 BASIC8.2□□□□□ -1.1
Traf1P39428 Vmn1r44-204ENSMUST00000226171 1877 ntBASIC8.2□□□□□ -1.1
Traf1P39428 Abca17-202ENSMUST00000121226 5317 ntAPPRIS P1 TSL 5 BASIC8.2□□□□□ -1.1
Traf1P39428 Zfp773-202ENSMUST00000211240 4073 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
Traf1P39428 Ighv1-31-201ENSMUST00000103511 294 ntAPPRIS P1 BASIC8.2□□□□□ -1.1
Traf1P39428 Ighv1-37-201ENSMUST00000103514 348 ntAPPRIS ALT2 BASIC8.2□□□□□ -1.1
Traf1P39428 Ighv1-42-201ENSMUST00000103516 294 ntAPPRIS P1 BASIC8.2□□□□□ -1.1
Traf1P39428 Ighv1-43-201ENSMUST00000103517 294 ntAPPRIS P1 BASIC8.2□□□□□ -1.1
Traf1P39428 Ighv1-66-201ENSMUST00000103537 399 ntAPPRIS P1 BASIC8.2□□□□□ -1.1
Traf1P39428 Ighv1-75-201ENSMUST00000103544 373 ntAPPRIS P1 BASIC8.2□□□□□ -1.1
Traf1P39428 Lage3-202ENSMUST00000114152 746 ntTSL 2 BASIC8.2□□□□□ -1.1
Traf1P39428 Stau2-209ENSMUST00000145092 564 ntTSL 5 BASIC8.2□□□□□ -1.1
Traf1P39428 Gm12236-201ENSMUST00000152968 250 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
Traf1P39428 Gm2619-202ENSMUST00000166777 651 ntBASIC8.2□□□□□ -1.1
Traf1P39428 Gm28117-201ENSMUST00000188472 371 ntBASIC8.2□□□□□ -1.1
Traf1P39428 Gm28289-201ENSMUST00000189331 315 ntTSL 5 BASIC8.2□□□□□ -1.1
Traf1P39428 Platr10-201ENSMUST00000190602 1026 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
Traf1P39428 Ighv1-29-201ENSMUST00000194116 342 ntBASIC8.2□□□□□ -1.1
Traf1P39428 Trav7-1-201ENSMUST00000198019 337 ntAPPRIS P1 BASIC8.2□□□□□ -1.1
Traf1P39428 Gm4870-201ENSMUST00000198525 1251 ntBASIC8.2□□□□□ -1.1
Traf1P39428 2210412B16Rik-201ENSMUST00000201281 498 ntBASIC8.2□□□□□ -1.1
Traf1P39428 1700028E10Rik-206ENSMUST00000202216 557 ntTSL 3 BASIC8.2□□□□□ -1.1
Traf1P39428 Gm32884-201ENSMUST00000205528 732 ntTSL 5 BASIC8.2□□□□□ -1.1
Traf1P39428 Gm44943-201ENSMUST00000207254 300 ntBASIC8.2□□□□□ -1.1
Traf1P39428 Gm45024-201ENSMUST00000208274 623 ntTSL 3 BASIC8.2□□□□□ -1.1
Traf1P39428 Gm44833-201ENSMUST00000208368 331 ntBASIC8.2□□□□□ -1.1
Traf1P39428 Defb15-201ENSMUST00000062586 345 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
Traf1P39428 Defa24-201ENSMUST00000080533 419 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
Traf1P39428 n-R5s169-201ENSMUST00000083110 120 ntBASIC8.2□□□□□ -1.1
Traf1P39428 Gm22865-201ENSMUST00000083949 214 ntBASIC8.2□□□□□ -1.1
Traf1P39428 Vmn1r195-201ENSMUST00000091736 1088 ntAPPRIS P1 BASIC8.2□□□□□ -1.1
Traf1P39428 Arhgap1-201ENSMUST00000090614 2866 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
Traf1P39428 Zfp397-201ENSMUST00000060762 5472 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
Traf1P39428 Cast-202ENSMUST00000220738 1653 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
Traf1P39428 Lncenc1-202ENSMUST00000179324 2764 ntTSL 2 BASIC8.2□□□□□ -1.1
Traf1P39428 Ceacam2-203ENSMUST00000066503 3140 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
Traf1P39428 Zc3h12b-201ENSMUST00000082183 2831 ntAPPRIS P1 TSL 5 BASIC8.2□□□□□ -1.1
Traf1P39428 Kel-201ENSMUST00000031899 2530 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
Traf1P39428 Gm3752-201ENSMUST00000164366 1817 ntAPPRIS P1 TSL 5 BASIC8.19□□□□□ -1.1
Traf1P39428 Cxcr1-202ENSMUST00000190313 1451 ntAPPRIS P1 BASIC8.19□□□□□ -1.1
Traf1P39428 A730017C20Rik-201ENSMUST00000058633 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC8.19□□□□□ -1.1
Traf1P39428 Gk-206ENSMUST00000142152 4229 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
Traf1P39428 Gm6602-201ENSMUST00000198910 1927 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
Traf1P39428 Gm37925-201ENSMUST00000195352 4255 ntBASIC8.19□□□□□ -1.1
Traf1P39428 AC154597.1-201ENSMUST00000224095 2713 ntBASIC8.19□□□□□ -1.1
Traf1P39428 Mef2c-214ENSMUST00000197722 3517 ntTSL 5 BASIC8.19□□□□□ -1.1
Traf1P39428 Rdh1-201ENSMUST00000073639 3930 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
Traf1P39428 Gm37535-201ENSMUST00000194442 2365 ntBASIC8.19□□□□□ -1.1
Traf1P39428 Adgrg6-203ENSMUST00000208429 3582 ntAPPRIS ALT2 TSL 5 BASIC8.19□□□□□ -1.1
Traf1P39428 Gm10568-201ENSMUST00000193244 1634 ntBASIC8.19□□□□□ -1.1
Traf1P39428 Rprd2-201ENSMUST00000090791 7756 ntAPPRIS P2 TSL 1 (best) BASIC8.19□□□□□ -1.1
Traf1P39428 Tph1-201ENSMUST00000049298 4562 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
Traf1P39428 Tek-201ENSMUST00000071168 4176 ntAPPRIS ALT2 TSL 1 (best) BASIC8.19□□□□□ -1.1
Traf1P39428 Gm22231-201ENSMUST00000101027 73 ntBASIC8.19□□□□□ -1.1
Traf1P39428 Gm22774-201ENSMUST00000102084 109 ntBASIC8.19□□□□□ -1.1
Traf1P39428 Igkv1-122-201ENSMUST00000103314 383 ntAPPRIS P1 BASIC8.19□□□□□ -1.1
Traf1P39428 Gm6142-201ENSMUST00000120290 325 ntBASIC8.19□□□□□ -1.1
Traf1P39428 Eif4e1b-203ENSMUST00000126785 841 ntAPPRIS ALT2 TSL 3 BASIC8.19□□□□□ -1.1
Traf1P39428 A330102I10Rik-203ENSMUST00000145801 737 ntTSL 5 BASIC8.19□□□□□ -1.1
Traf1P39428 1700086P04Rik-201ENSMUST00000149472 1009 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
Traf1P39428 Gm15628-201ENSMUST00000162051 547 ntTSL 2 BASIC8.19□□□□□ -1.1
Traf1P39428 1700011B04Rik-201ENSMUST00000189140 651 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
Traf1P39428 Gm2860-201ENSMUST00000199226 707 ntBASIC8.19□□□□□ -1.1
Traf1P39428 Gm20223-201ENSMUST00000199932 805 ntBASIC8.19□□□□□ -1.1
Traf1P39428 Gm43786-202ENSMUST00000202157 616 ntTSL 3 BASIC8.19□□□□□ -1.1
Traf1P39428 Gm2221-201ENSMUST00000209342 418 ntBASIC8.19□□□□□ -1.1
Traf1P39428 Olfr976-204ENSMUST00000217630 2952 ntAPPRIS ALT2 TSL 5 BASIC8.19□□□□□ -1.1
Traf1P39428 1700011B04Rik-205ENSMUST00000220995 831 ntTSL 5 BASIC8.19□□□□□ -1.1
Traf1P39428 1700011B04Rik-207ENSMUST00000221256 800 ntTSL 5 BASIC8.19□□□□□ -1.1
Traf1P39428 1700011B04Rik-208ENSMUST00000221261 628 ntTSL 5 BASIC8.19□□□□□ -1.1
Traf1P39428 AC127242.3-201ENSMUST00000222009 580 ntBASIC8.19□□□□□ -1.1
Traf1P39428 1700011B04Rik-210ENSMUST00000222668 821 ntTSL 5 BASIC8.19□□□□□ -1.1
Retrieved 100 of 76,532 protein–RNA pairs in 50.8 ms