Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 AC163660.1-201ENSMUST00000223696 818 ntBASIC5.61□□□□□ -1.51
Hmgb3O54879 AV026068-218ENSMUST00000223980 575 ntBASIC5.61□□□□□ -1.51
Hmgb3O54879 Pdcl2-201ENSMUST00000031145 1181 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
Hmgb3O54879 Lgals2-201ENSMUST00000044584 590 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
Hmgb3O54879 Olfr691-201ENSMUST00000057528 969 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
Hmgb3O54879 Olfr610-201ENSMUST00000063109 948 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
Hmgb3O54879 Gbp10-201ENSMUST00000065588 3528 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
Hmgb3O54879 Olfr402-201ENSMUST00000073675 1012 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
Hmgb3O54879 Vpreb2-201ENSMUST00000075371 429 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
Hmgb3O54879 Olfr1032-202ENSMUST00000079298 1442 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
Hmgb3O54879 Prl3d1-201ENSMUST00000082079 872 ntAPPRIS ALT2 TSL 1 (best) BASIC5.61□□□□□ -1.51
Hmgb3O54879 Gm16391-201ENSMUST00000086601 447 ntBASIC5.61□□□□□ -1.51
Hmgb3O54879 Vmn1r196-201ENSMUST00000091735 906 ntAPPRIS P2 BASIC5.61□□□□□ -1.51
Hmgb3O54879 Scn8a-202ENSMUST00000096198 1072 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
Hmgb3O54879 AW554918-201ENSMUST00000036619 5257 ntAPPRIS P5 TSL 5 BASIC5.61□□□□□ -1.51
Hmgb3O54879 Olfr591-202ENSMUST00000216581 4802 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
Hmgb3O54879 4933406B17Rik-201ENSMUST00000212602 4333 ntTSL 5 BASIC5.61□□□□□ -1.51
Hmgb3O54879 Inpp4b-202ENSMUST00000109851 3906 ntAPPRIS ALT2 TSL 1 (best) BASIC5.61□□□□□ -1.51
Hmgb3O54879 Gm42611-201ENSMUST00000199446 3407 ntBASIC5.61□□□□□ -1.51
Hmgb3O54879 Gm43421-201ENSMUST00000200044 2905 ntBASIC5.61□□□□□ -1.51
Hmgb3O54879 Msantd4-202ENSMUST00000212075 2800 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
Hmgb3O54879 Xrn1-201ENSMUST00000034981 5499 ntAPPRIS P3 TSL 1 (best) BASIC5.61□□□□□ -1.51
Hmgb3O54879 Gm43502-201ENSMUST00000200263 2596 ntBASIC5.61□□□□□ -1.51
Hmgb3O54879 Olfr432-202ENSMUST00000213211 4435 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
Hmgb3O54879 C330024D21Rik-202ENSMUST00000202634 2020 ntTSL 2 BASIC5.6□□□□□ -1.51
Hmgb3O54879 Dnah12-201ENSMUST00000022433 12009 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
Hmgb3O54879 Cdk14-203ENSMUST00000115451 5145 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
Hmgb3O54879 Csnk1g1-204ENSMUST00000130798 1648 ntTSL 5 BASIC5.6□□□□□ -1.51
Hmgb3O54879 C430042M11Rik-201ENSMUST00000180515 1617 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
Hmgb3O54879 Gm44194-201ENSMUST00000204222 3229 ntBASIC5.6□□□□□ -1.51
Hmgb3O54879 Gm6729-201ENSMUST00000165173 1452 ntBASIC5.6□□□□□ -1.51
Hmgb3O54879 Nr1h5-203ENSMUST00000196983 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
Hmgb3O54879 Gm45251-201ENSMUST00000209486 1465 ntBASIC5.6□□□□□ -1.51
Hmgb3O54879 Rnf146-205ENSMUST00000162335 1434 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
Hmgb3O54879 CT009718.2-201ENSMUST00000221408 1428 ntTSL 5 BASIC5.6□□□□□ -1.51
Hmgb3O54879 Vmn1r9-202ENSMUST00000227399 6778 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
Hmgb3O54879 Hormad2-203ENSMUST00000109949 1343 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
Hmgb3O54879 Lyz2-201ENSMUST00000092163 1316 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
Hmgb3O54879 Sh2d1a-203ENSMUST00000115070 782 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
Hmgb3O54879 Gm41-201ENSMUST00000116183 1023 ntBASIC5.6□□□□□ -1.51
Hmgb3O54879 Sumo2-203ENSMUST00000117589 987 ntTSL 3 BASIC5.6□□□□□ -1.51
Hmgb3O54879 Gm13878-201ENSMUST00000117986 577 ntBASIC5.6□□□□□ -1.51
Hmgb3O54879 Gm11810-201ENSMUST00000118311 333 ntBASIC5.6□□□□□ -1.51
Hmgb3O54879 Gm5319-201ENSMUST00000118965 873 ntBASIC5.6□□□□□ -1.51
Hmgb3O54879 Gm14227-201ENSMUST00000119431 629 ntBASIC5.6□□□□□ -1.51
Hmgb3O54879 Gm11485-201ENSMUST00000120048 1175 ntBASIC5.6□□□□□ -1.51
Hmgb3O54879 Gm1947-201ENSMUST00000122451 910 ntBASIC5.6□□□□□ -1.51
Hmgb3O54879 Gm12668-201ENSMUST00000134966 575 ntTSL 3 BASIC5.6□□□□□ -1.51
Hmgb3O54879 Gm14024-201ENSMUST00000141964 560 ntTSL 2 BASIC5.6□□□□□ -1.51
Hmgb3O54879 Gm13322-201ENSMUST00000152803 246 ntTSL 5 BASIC5.6□□□□□ -1.51
Hmgb3O54879 Sumo2-207ENSMUST00000153892 1051 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
Hmgb3O54879 C130080G10Rik-204ENSMUST00000155185 954 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
Hmgb3O54879 Gm26070-201ENSMUST00000157500 137 ntBASIC5.6□□□□□ -1.51
Hmgb3O54879 Gm23891-201ENSMUST00000158114 138 ntBASIC5.6□□□□□ -1.51
Hmgb3O54879 Gm22569-201ENSMUST00000175545 124 ntBASIC5.6□□□□□ -1.51
Hmgb3O54879 Gm7678-201ENSMUST00000181879 943 ntBASIC5.6□□□□□ -1.51
Hmgb3O54879 Gm7481-201ENSMUST00000182020 995 ntBASIC5.6□□□□□ -1.51
Hmgb3O54879 Mir8095-201ENSMUST00000185103 129 ntBASIC5.6□□□□□ -1.51
Hmgb3O54879 Gm29355-201ENSMUST00000188178 697 ntBASIC5.6□□□□□ -1.51
Hmgb3O54879 Gm28953-201ENSMUST00000188336 697 ntBASIC5.6□□□□□ -1.51
Hmgb3O54879 Gm28286-201ENSMUST00000188704 586 ntTSL 2 BASIC5.6□□□□□ -1.51
Hmgb3O54879 Gm28164-201ENSMUST00000190143 442 ntBASIC5.6□□□□□ -1.51
Hmgb3O54879 Gm20788-201ENSMUST00000190538 697 ntBASIC5.6□□□□□ -1.51
Hmgb3O54879 Gm37395-201ENSMUST00000194721 697 ntBASIC5.6□□□□□ -1.51
Hmgb3O54879 Gm37440-202ENSMUST00000195572 1227 ntTSL 5 BASIC5.6□□□□□ -1.51
Hmgb3O54879 Tmigd3-206ENSMUST00000199977 838 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
Hmgb3O54879 Gm19590-201ENSMUST00000201551 1195 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
Hmgb3O54879 Rpl19-ps9-201ENSMUST00000205423 588 ntBASIC5.6□□□□□ -1.51
Hmgb3O54879 Gm45446-201ENSMUST00000209348 216 ntBASIC5.6□□□□□ -1.51
Hmgb3O54879 4930555F03Rik-205ENSMUST00000212179 1257 ntTSL 5 BASIC5.6□□□□□ -1.51
Hmgb3O54879 Gm34424-201ENSMUST00000213400 782 ntBASIC5.6□□□□□ -1.51
Hmgb3O54879 Gm40646-202ENSMUST00000218796 793 ntTSL 5 BASIC5.6□□□□□ -1.51
Hmgb3O54879 AV026068-225ENSMUST00000225042 490 ntBASIC5.6□□□□□ -1.51
Hmgb3O54879 Olfr680-ps1-201ENSMUST00000042676 936 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
Hmgb3O54879 Olfr1032-201ENSMUST00000062166 933 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
Hmgb3O54879 Snora21-201ENSMUST00000082967 137 ntBASIC5.6□□□□□ -1.51
Hmgb3O54879 Olfr5-201ENSMUST00000086318 1044 ntAPPRIS P1 TSL 3 BASIC5.6□□□□□ -1.51
Hmgb3O54879 Zfp708-202ENSMUST00000109743 2536 ntAPPRIS ALT2 TSL 2 BASIC5.6□□□□□ -1.51
Hmgb3O54879 Rabgap1-201ENSMUST00000061179 4967 ntAPPRIS P4 TSL 1 (best) BASIC5.6□□□□□ -1.51
Hmgb3O54879 Synrg-208ENSMUST00000183714 3651 ntAPPRIS ALT2 TSL 5 BASIC5.6□□□□□ -1.51
Hmgb3O54879 Gucy2f-201ENSMUST00000042530 8122 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
Hmgb3O54879 Gm42894-201ENSMUST00000200788 3390 ntBASIC5.6□□□□□ -1.51
Hmgb3O54879 Rfwd3-201ENSMUST00000038739 4443 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
Hmgb3O54879 Gm28798-201ENSMUST00000186372 2161 ntTSL 5 BASIC5.6□□□□□ -1.51
Hmgb3O54879 Gm43515-201ENSMUST00000197930 2141 ntBASIC5.6□□□□□ -1.51
Hmgb3O54879 Spam1-202ENSMUST00000202331 2100 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
Hmgb3O54879 Cnga1-202ENSMUST00000126799 2061 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
Hmgb3O54879 Stk38l-201ENSMUST00000001675 4550 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
Hmgb3O54879 Gm14245-201ENSMUST00000118939 1843 ntBASIC5.6□□□□□ -1.51
Hmgb3O54879 Vmn1r44-210ENSMUST00000227747 1811 ntBASIC5.6□□□□□ -1.51
Hmgb3O54879 Zfp345-201ENSMUST00000109914 2734 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
Hmgb3O54879 Gm6356-201ENSMUST00000166618 1757 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
Hmgb3O54879 4930553P18Rik-201ENSMUST00000201164 1659 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
Hmgb3O54879 AC154642.2-201ENSMUST00000223657 2485 ntBASIC5.59□□□□□ -1.51
Hmgb3O54879 Gm9030-201ENSMUST00000218405 2410 ntBASIC5.59□□□□□ -1.51
Hmgb3O54879 Gm9029-201ENSMUST00000219232 2410 ntBASIC5.59□□□□□ -1.51
Hmgb3O54879 Gramd1c-203ENSMUST00000179565 3159 ntTSL 5 BASIC5.59□□□□□ -1.51
Hmgb3O54879 Gm37382-201ENSMUST00000193032 1596 ntBASIC5.59□□□□□ -1.51
Hmgb3O54879 A630072L19Rik-202ENSMUST00000221309 1519 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
Hmgb3O54879 Xcr1-201ENSMUST00000182350 4453 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
Retrieved 100 of 76,532 protein–RNA pairs in 99.7 ms