Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Cpsf3Q9QXK7 Tlcd1-202ENSMUST00000098545 2897 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Cpsf3Q9QXK7 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Cpsf3Q9QXK7 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Cpsf3Q9QXK7 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Cpsf3Q9QXK7 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Cpsf3Q9QXK7 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Cpsf3Q9QXK7 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Cpsf3Q9QXK7 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Cpsf3Q9QXK7 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Cpsf3Q9QXK7 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
Cpsf3Q9QXK7 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
Cpsf3Q9QXK7 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC19.74■□□□□ 0.75
Cpsf3Q9QXK7 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Cpsf3Q9QXK7 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC19.74■□□□□ 0.75
Cpsf3Q9QXK7 Iqck-206ENSMUST00000208658 2891 ntBASIC19.74■□□□□ 0.75
Cpsf3Q9QXK7 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Cpsf3Q9QXK7 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Cpsf3Q9QXK7 Golph3-205ENSMUST00000228671 2842 ntBASIC19.74■□□□□ 0.75
Cpsf3Q9QXK7 Creld1-201ENSMUST00000032422 2306 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Cpsf3Q9QXK7 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Cpsf3Q9QXK7 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
Cpsf3Q9QXK7 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
Cpsf3Q9QXK7 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Cpsf3Q9QXK7 Dapk1-207ENSMUST00000226059 5009 ntBASIC19.73■□□□□ 0.75
Cpsf3Q9QXK7 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Cpsf3Q9QXK7 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC19.73■□□□□ 0.75
Cpsf3Q9QXK7 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Cpsf3Q9QXK7 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Cpsf3Q9QXK7 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC19.73■□□□□ 0.75
Cpsf3Q9QXK7 Gm10653-202ENSMUST00000139570 835 ntBASIC19.73■□□□□ 0.75
Cpsf3Q9QXK7 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Cpsf3Q9QXK7 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC19.73■□□□□ 0.75
Cpsf3Q9QXK7 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC19.73■□□□□ 0.75
Cpsf3Q9QXK7 Nfu1-201ENSMUST00000032060 948 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
Cpsf3Q9QXK7 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Cpsf3Q9QXK7 Aamp-201ENSMUST00000006462 1817 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
Cpsf3Q9QXK7 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
Cpsf3Q9QXK7 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Cpsf3Q9QXK7 Cdh4-201ENSMUST00000000314 6388 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Cpsf3Q9QXK7 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Cpsf3Q9QXK7 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
Cpsf3Q9QXK7 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Cpsf3Q9QXK7 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Cpsf3Q9QXK7 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
Cpsf3Q9QXK7 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC19.72■□□□□ 0.75
Cpsf3Q9QXK7 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC19.72■□□□□ 0.75
Cpsf3Q9QXK7 Mdfic-202ENSMUST00000120512 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Cpsf3Q9QXK7 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Cpsf3Q9QXK7 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Cpsf3Q9QXK7 Gm45472-201ENSMUST00000211295 1426 ntTSL 5 BASIC19.72■□□□□ 0.75
Cpsf3Q9QXK7 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Cpsf3Q9QXK7 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
Cpsf3Q9QXK7 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Cpsf3Q9QXK7 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Cpsf3Q9QXK7 Gm45906-201ENSMUST00000208911 1430 ntBASIC19.71■□□□□ 0.75
Cpsf3Q9QXK7 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Cpsf3Q9QXK7 Gm12896-201ENSMUST00000118430 226 ntBASIC19.71■□□□□ 0.75
Cpsf3Q9QXK7 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Cpsf3Q9QXK7 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Cpsf3Q9QXK7 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC19.71■□□□□ 0.75
Cpsf3Q9QXK7 Man1a-203ENSMUST00000105470 2847 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
Cpsf3Q9QXK7 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Cpsf3Q9QXK7 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Cpsf3Q9QXK7 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Cpsf3Q9QXK7 Dio3-201ENSMUST00000097228 1449 ntBASIC19.7■□□□□ 0.74
Cpsf3Q9QXK7 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
Cpsf3Q9QXK7 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC19.7■□□□□ 0.74
Cpsf3Q9QXK7 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
Cpsf3Q9QXK7 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
Cpsf3Q9QXK7 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC19.7■□□□□ 0.74
Cpsf3Q9QXK7 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Cpsf3Q9QXK7 Gm37856-201ENSMUST00000191634 999 ntBASIC19.7■□□□□ 0.74
Cpsf3Q9QXK7 Gm2559-201ENSMUST00000201323 363 ntBASIC19.7■□□□□ 0.74
Cpsf3Q9QXK7 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
Cpsf3Q9QXK7 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Cpsf3Q9QXK7 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Cpsf3Q9QXK7 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Cpsf3Q9QXK7 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Cpsf3Q9QXK7 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC19.69■□□□□ 0.74
Cpsf3Q9QXK7 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Cpsf3Q9QXK7 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Cpsf3Q9QXK7 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC19.69■□□□□ 0.74
Cpsf3Q9QXK7 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Cpsf3Q9QXK7 Gm2399-201ENSMUST00000104944 225 ntBASIC19.69■□□□□ 0.74
Cpsf3Q9QXK7 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC19.69■□□□□ 0.74
Cpsf3Q9QXK7 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Cpsf3Q9QXK7 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Cpsf3Q9QXK7 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Cpsf3Q9QXK7 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
Cpsf3Q9QXK7 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Cpsf3Q9QXK7 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC19.69■□□□□ 0.74
Cpsf3Q9QXK7 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Cpsf3Q9QXK7 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Cpsf3Q9QXK7 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Cpsf3Q9QXK7 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Cpsf3Q9QXK7 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Cpsf3Q9QXK7 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
Cpsf3Q9QXK7 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cpsf3Q9QXK7 Tsc22d1-214ENSMUST00000177207 1476 ntTSL 3 BASIC19.68■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 42.5 ms