Protein–RNA interactions for Protein: Q9CQ56

Use1, Vesicle transport protein USE1, mousemouse

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Use1Q9CQ56 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Use1Q9CQ56 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Use1Q9CQ56 Trmt112-201ENSMUST00000088257 957 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Use1Q9CQ56 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
Use1Q9CQ56 Gm42922-201ENSMUST00000195887 2078 ntBASIC17.33■□□□□ 0.36
Use1Q9CQ56 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Use1Q9CQ56 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Use1Q9CQ56 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Use1Q9CQ56 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Use1Q9CQ56 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Use1Q9CQ56 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Use1Q9CQ56 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Use1Q9CQ56 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Use1Q9CQ56 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Use1Q9CQ56 Gm43060-201ENSMUST00000200621 289 ntBASIC17.32■□□□□ 0.36
Use1Q9CQ56 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Use1Q9CQ56 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Use1Q9CQ56 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Use1Q9CQ56 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Use1Q9CQ56 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
Use1Q9CQ56 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Use1Q9CQ56 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Use1Q9CQ56 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Use1Q9CQ56 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Use1Q9CQ56 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Use1Q9CQ56 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
Use1Q9CQ56 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
Use1Q9CQ56 Tmem214-202ENSMUST00000201203 6110 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Use1Q9CQ56 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Use1Q9CQ56 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Use1Q9CQ56 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Use1Q9CQ56 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Use1Q9CQ56 Sept9-201ENSMUST00000019038 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Use1Q9CQ56 Depdc7-201ENSMUST00000028595 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Use1Q9CQ56 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Use1Q9CQ56 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Use1Q9CQ56 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
Use1Q9CQ56 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC17.3■□□□□ 0.36
Use1Q9CQ56 Nuak1-201ENSMUST00000020220 5558 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Use1Q9CQ56 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Use1Q9CQ56 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Use1Q9CQ56 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC17.3■□□□□ 0.36
Use1Q9CQ56 AC104834.1-201ENSMUST00000222611 1056 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
Use1Q9CQ56 Ikzf1-202ENSMUST00000048122 911 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Use1Q9CQ56 Bmt2-201ENSMUST00000045235 4143 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Use1Q9CQ56 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Use1Q9CQ56 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Use1Q9CQ56 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Use1Q9CQ56 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Use1Q9CQ56 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Use1Q9CQ56 Inpp4a-201ENSMUST00000027287 5691 ntAPPRIS P2 TSL 5 BASIC17.3■□□□□ 0.36
Use1Q9CQ56 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Use1Q9CQ56 Iqsec2-202ENSMUST00000112604 5967 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Use1Q9CQ56 F8a-201ENSMUST00000105111 2505 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
Use1Q9CQ56 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Use1Q9CQ56 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Use1Q9CQ56 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC17.29■□□□□ 0.36
Use1Q9CQ56 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Use1Q9CQ56 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Use1Q9CQ56 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
Use1Q9CQ56 Ndufa10-201ENSMUST00000027478 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Use1Q9CQ56 Igdcc4-205ENSMUST00000213533 6220 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Use1Q9CQ56 Igdcc4-201ENSMUST00000035499 6223 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Use1Q9CQ56 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC17.29■□□□□ 0.36
Use1Q9CQ56 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Use1Q9CQ56 Fez2-201ENSMUST00000070039 1939 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Use1Q9CQ56 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Use1Q9CQ56 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC17.29■□□□□ 0.36
Use1Q9CQ56 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Use1Q9CQ56 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Use1Q9CQ56 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Use1Q9CQ56 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Use1Q9CQ56 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Use1Q9CQ56 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Use1Q9CQ56 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Use1Q9CQ56 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC17.28■□□□□ 0.36
Use1Q9CQ56 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Use1Q9CQ56 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC17.28■□□□□ 0.36
Use1Q9CQ56 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC17.28■□□□□ 0.36
Use1Q9CQ56 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC17.28■□□□□ 0.36
Use1Q9CQ56 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Use1Q9CQ56 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Use1Q9CQ56 Adam22-205ENSMUST00000115385 2318 ntTSL 2 BASIC17.28■□□□□ 0.36
Use1Q9CQ56 Hs6st1-201ENSMUST00000088174 3719 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Use1Q9CQ56 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Use1Q9CQ56 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC17.28■□□□□ 0.36
Use1Q9CQ56 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Use1Q9CQ56 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Use1Q9CQ56 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Use1Q9CQ56 Tulp1-201ENSMUST00000041819 2017 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Use1Q9CQ56 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Use1Q9CQ56 Creg1-202ENSMUST00000111432 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Use1Q9CQ56 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Use1Q9CQ56 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Use1Q9CQ56 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
Use1Q9CQ56 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC17.27■□□□□ 0.36
Use1Q9CQ56 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC17.27■□□□□ 0.36
Use1Q9CQ56 Mapk1-202ENSMUST00000069107 5099 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Use1Q9CQ56 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Use1Q9CQ56 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Retrieved 100 of 76,532 protein–RNA pairs in 29.8 ms