Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Msh4Q99MT2 Gm42555-201ENSMUST00000199304 1039 ntBASIC17.83■□□□□ 0.44
Msh4Q99MT2 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC17.83■□□□□ 0.44
Msh4Q99MT2 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Msh4Q99MT2 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Msh4Q99MT2 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Msh4Q99MT2 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Msh4Q99MT2 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC17.83■□□□□ 0.44
Msh4Q99MT2 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC17.83■□□□□ 0.44
Msh4Q99MT2 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Msh4Q99MT2 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Msh4Q99MT2 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Msh4Q99MT2 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Msh4Q99MT2 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
Msh4Q99MT2 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Msh4Q99MT2 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC17.83■□□□□ 0.44
Msh4Q99MT2 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Msh4Q99MT2 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Msh4Q99MT2 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
Msh4Q99MT2 Fbxo24-202ENSMUST00000111002 2306 ntTSL 5 BASIC17.82■□□□□ 0.44
Msh4Q99MT2 Rarb-207ENSMUST00000225921 2756 ntBASIC17.82■□□□□ 0.44
Msh4Q99MT2 Gm5297-201ENSMUST00000198555 1171 ntBASIC17.82■□□□□ 0.44
Msh4Q99MT2 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Msh4Q99MT2 Sohlh1-201ENSMUST00000076989 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Msh4Q99MT2 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
Msh4Q99MT2 Gm10602-201ENSMUST00000098239 609 ntBASIC17.82■□□□□ 0.44
Msh4Q99MT2 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Msh4Q99MT2 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Msh4Q99MT2 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Msh4Q99MT2 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Msh4Q99MT2 Uhmk1-202ENSMUST00000123399 7775 ntTSL 5 BASIC17.82■□□□□ 0.44
Msh4Q99MT2 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Msh4Q99MT2 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Msh4Q99MT2 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Msh4Q99MT2 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
Msh4Q99MT2 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Msh4Q99MT2 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Msh4Q99MT2 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC17.81■□□□□ 0.44
Msh4Q99MT2 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Msh4Q99MT2 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Msh4Q99MT2 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Msh4Q99MT2 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC17.8■□□□□ 0.44
Msh4Q99MT2 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Msh4Q99MT2 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Msh4Q99MT2 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC17.8■□□□□ 0.44
Msh4Q99MT2 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Msh4Q99MT2 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Msh4Q99MT2 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC17.8■□□□□ 0.44
Msh4Q99MT2 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Msh4Q99MT2 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Msh4Q99MT2 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Msh4Q99MT2 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
Msh4Q99MT2 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
Msh4Q99MT2 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Msh4Q99MT2 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC17.79■□□□□ 0.44
Msh4Q99MT2 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Msh4Q99MT2 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Msh4Q99MT2 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC17.79■□□□□ 0.44
Msh4Q99MT2 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Msh4Q99MT2 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Msh4Q99MT2 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
Msh4Q99MT2 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC17.79■□□□□ 0.44
Msh4Q99MT2 Grk6-206ENSMUST00000224995 2971 ntBASIC17.79■□□□□ 0.44
Msh4Q99MT2 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Msh4Q99MT2 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Msh4Q99MT2 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Msh4Q99MT2 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Msh4Q99MT2 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC17.79■□□□□ 0.44
Msh4Q99MT2 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC17.79■□□□□ 0.44
Msh4Q99MT2 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Msh4Q99MT2 Creld1-201ENSMUST00000032422 2306 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Msh4Q99MT2 Gm10300-201ENSMUST00000094662 2296 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
Msh4Q99MT2 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Msh4Q99MT2 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Msh4Q99MT2 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC17.78■□□□□ 0.44
Msh4Q99MT2 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC17.78■□□□□ 0.44
Msh4Q99MT2 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC17.78■□□□□ 0.44
Msh4Q99MT2 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Msh4Q99MT2 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Msh4Q99MT2 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC17.78■□□□□ 0.44
Msh4Q99MT2 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Msh4Q99MT2 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Msh4Q99MT2 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Msh4Q99MT2 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
Msh4Q99MT2 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Msh4Q99MT2 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Msh4Q99MT2 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Msh4Q99MT2 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Msh4Q99MT2 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Msh4Q99MT2 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Msh4Q99MT2 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Msh4Q99MT2 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Msh4Q99MT2 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Msh4Q99MT2 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Msh4Q99MT2 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Msh4Q99MT2 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC17.77■□□□□ 0.44
Msh4Q99MT2 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Msh4Q99MT2 Mir5133-201ENSMUST00000174955 77 ntBASIC17.77■□□□□ 0.44
Msh4Q99MT2 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
Msh4Q99MT2 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 19.9 ms