Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Mir7071-201ENSMUST00000184847 69 ntBASIC20.54■□□□□ 0.88
Ushbp1Q8R370 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ushbp1Q8R370 Gm43213-201ENSMUST00000151866 1790 ntBASIC20.54■□□□□ 0.88
Ushbp1Q8R370 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Ushbp1Q8R370 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Ushbp1Q8R370 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ushbp1Q8R370 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ushbp1Q8R370 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ushbp1Q8R370 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ushbp1Q8R370 Tcap-201ENSMUST00000008021 948 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ushbp1Q8R370 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Ushbp1Q8R370 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Ushbp1Q8R370 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Ushbp1Q8R370 Tagln-201ENSMUST00000034590 1595 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Ushbp1Q8R370 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Ushbp1Q8R370 Josd2-218ENSMUST00000206887 693 ntTSL 5 BASIC20.52■□□□□ 0.88
Ushbp1Q8R370 AC135637.1-201ENSMUST00000227750 365 ntBASIC20.52■□□□□ 0.88
Ushbp1Q8R370 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC20.52■□□□□ 0.88
Ushbp1Q8R370 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
Ushbp1Q8R370 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Ushbp1Q8R370 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Ushbp1Q8R370 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Ushbp1Q8R370 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Ushbp1Q8R370 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC20.52■□□□□ 0.87
Ushbp1Q8R370 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ushbp1Q8R370 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Ushbp1Q8R370 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ushbp1Q8R370 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Ushbp1Q8R370 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC20.51■□□□□ 0.87
Ushbp1Q8R370 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ushbp1Q8R370 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC20.51■□□□□ 0.87
Ushbp1Q8R370 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC20.51■□□□□ 0.87
Ushbp1Q8R370 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
Ushbp1Q8R370 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ushbp1Q8R370 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ushbp1Q8R370 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ushbp1Q8R370 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ushbp1Q8R370 Dmtn-210ENSMUST00000228824 2377 ntBASIC20.51■□□□□ 0.87
Ushbp1Q8R370 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ushbp1Q8R370 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ushbp1Q8R370 Prmt3-201ENSMUST00000032715 2507 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Ushbp1Q8R370 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
Ushbp1Q8R370 Hpn-202ENSMUST00000108102 1830 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Ushbp1Q8R370 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Ushbp1Q8R370 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Ushbp1Q8R370 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ushbp1Q8R370 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ushbp1Q8R370 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC20.5■□□□□ 0.87
Ushbp1Q8R370 Tspan2os-201ENSMUST00000146624 590 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Ushbp1Q8R370 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ushbp1Q8R370 Slc7a6os-201ENSMUST00000035925 1246 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ushbp1Q8R370 Gm42922-201ENSMUST00000195887 2078 ntBASIC20.5■□□□□ 0.87
Ushbp1Q8R370 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
Ushbp1Q8R370 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ushbp1Q8R370 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC20.5■□□□□ 0.87
Ushbp1Q8R370 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ushbp1Q8R370 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Ushbp1Q8R370 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ushbp1Q8R370 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ushbp1Q8R370 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ushbp1Q8R370 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Ushbp1Q8R370 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ushbp1Q8R370 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ushbp1Q8R370 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ushbp1Q8R370 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ushbp1Q8R370 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ushbp1Q8R370 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
Ushbp1Q8R370 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ushbp1Q8R370 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
Ushbp1Q8R370 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC20.49■□□□□ 0.87
Ushbp1Q8R370 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC20.49■□□□□ 0.87
Ushbp1Q8R370 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ushbp1Q8R370 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Ushbp1Q8R370 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ushbp1Q8R370 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ushbp1Q8R370 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
Ushbp1Q8R370 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ushbp1Q8R370 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC20.48■□□□□ 0.87
Ushbp1Q8R370 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Ushbp1Q8R370 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC20.48■□□□□ 0.87
Ushbp1Q8R370 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ushbp1Q8R370 Gm10812-201ENSMUST00000099864 546 ntBASIC20.48■□□□□ 0.87
Ushbp1Q8R370 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ushbp1Q8R370 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ushbp1Q8R370 Gm16432-201ENSMUST00000094273 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ushbp1Q8R370 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Ushbp1Q8R370 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ushbp1Q8R370 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ushbp1Q8R370 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ushbp1Q8R370 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ushbp1Q8R370 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ushbp1Q8R370 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
Ushbp1Q8R370 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ushbp1Q8R370 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ushbp1Q8R370 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC20.47■□□□□ 0.87
Ushbp1Q8R370 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC20.47■□□□□ 0.87
Ushbp1Q8R370 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC20.47■□□□□ 0.87
Ushbp1Q8R370 Gm6211-202ENSMUST00000167849 925 ntBASIC20.47■□□□□ 0.87
Ushbp1Q8R370 Aamp-201ENSMUST00000006462 1817 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
Ushbp1Q8R370 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 28.5 ms