Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Trim56Q80VI1 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Trim56Q80VI1 Nfu1-201ENSMUST00000032060 948 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
Trim56Q80VI1 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
Trim56Q80VI1 Fstl3-201ENSMUST00000020575 1955 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Trim56Q80VI1 Dio3-201ENSMUST00000097228 1449 ntBASIC21.7■■□□□ 1.06
Trim56Q80VI1 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Trim56Q80VI1 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Trim56Q80VI1 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Trim56Q80VI1 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Trim56Q80VI1 Ralgapa1-204ENSMUST00000219432 6631 ntTSL 5 BASIC21.69■■□□□ 1.06
Trim56Q80VI1 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Trim56Q80VI1 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Trim56Q80VI1 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Trim56Q80VI1 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
Trim56Q80VI1 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
Trim56Q80VI1 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Trim56Q80VI1 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Trim56Q80VI1 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Trim56Q80VI1 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Trim56Q80VI1 Tmem145-202ENSMUST00000119703 1781 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
Trim56Q80VI1 Gm38308-201ENSMUST00000194934 1809 ntBASIC21.69■■□□□ 1.06
Trim56Q80VI1 Ipp-202ENSMUST00000106479 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Trim56Q80VI1 Ipp-201ENSMUST00000030461 2115 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
Trim56Q80VI1 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
Trim56Q80VI1 Gm2399-201ENSMUST00000104944 225 ntBASIC21.68■■□□□ 1.06
Trim56Q80VI1 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Trim56Q80VI1 Gm2559-201ENSMUST00000201323 363 ntBASIC21.68■■□□□ 1.06
Trim56Q80VI1 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC21.68■■□□□ 1.06
Trim56Q80VI1 Tfdp2-209ENSMUST00000188750 1713 ntAPPRIS ALT2 TSL 5 BASIC21.68■■□□□ 1.06
Trim56Q80VI1 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
Trim56Q80VI1 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC21.68■■□□□ 1.06
Trim56Q80VI1 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Trim56Q80VI1 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Trim56Q80VI1 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Trim56Q80VI1 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Trim56Q80VI1 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
Trim56Q80VI1 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
Trim56Q80VI1 Insig2-201ENSMUST00000003818 2697 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Trim56Q80VI1 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Trim56Q80VI1 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
Trim56Q80VI1 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Trim56Q80VI1 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Trim56Q80VI1 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Trim56Q80VI1 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Trim56Q80VI1 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Trim56Q80VI1 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC21.66■■□□□ 1.06
Trim56Q80VI1 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Trim56Q80VI1 Stac2-201ENSMUST00000017544 3050 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Trim56Q80VI1 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
Trim56Q80VI1 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
Trim56Q80VI1 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Trim56Q80VI1 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Trim56Q80VI1 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
Trim56Q80VI1 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC21.65■■□□□ 1.06
Trim56Q80VI1 Wnt10b-205ENSMUST00000226846 1204 ntBASIC21.65■■□□□ 1.06
Trim56Q80VI1 Spcs1-207ENSMUST00000228767 1008 ntBASIC21.65■■□□□ 1.06
Trim56Q80VI1 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Trim56Q80VI1 Tsc22d1-214ENSMUST00000177207 1476 ntTSL 3 BASIC21.64■■□□□ 1.06
Trim56Q80VI1 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Trim56Q80VI1 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.06
Trim56Q80VI1 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Trim56Q80VI1 Gm45447-201ENSMUST00000209874 1805 ntTSL 5 BASIC21.64■■□□□ 1.06
Trim56Q80VI1 AC121961.1-201ENSMUST00000218594 1779 ntBASIC21.64■■□□□ 1.06
Trim56Q80VI1 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC21.64■■□□□ 1.06
Trim56Q80VI1 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC21.64■■□□□ 1.06
Trim56Q80VI1 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC21.64■■□□□ 1.05
Trim56Q80VI1 Dmtn-210ENSMUST00000228824 2377 ntBASIC21.64■■□□□ 1.05
Trim56Q80VI1 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC21.64■■□□□ 1.05
Trim56Q80VI1 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC21.64■■□□□ 1.05
Trim56Q80VI1 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC21.64■■□□□ 1.05
Trim56Q80VI1 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Trim56Q80VI1 AC112142.1-201ENSMUST00000228796 918 ntBASIC21.64■■□□□ 1.05
Trim56Q80VI1 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC21.64■■□□□ 1.05
Trim56Q80VI1 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
Trim56Q80VI1 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Trim56Q80VI1 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
Trim56Q80VI1 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
Trim56Q80VI1 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
Trim56Q80VI1 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC21.63■■□□□ 1.05
Trim56Q80VI1 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC21.63■■□□□ 1.05
Trim56Q80VI1 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
Trim56Q80VI1 Gm11249-201ENSMUST00000117071 859 ntBASIC21.63■■□□□ 1.05
Trim56Q80VI1 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC21.63■■□□□ 1.05
Trim56Q80VI1 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
Trim56Q80VI1 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Trim56Q80VI1 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Trim56Q80VI1 Gm43213-201ENSMUST00000151866 1790 ntBASIC21.63■■□□□ 1.05
Trim56Q80VI1 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
Trim56Q80VI1 Ergic3-201ENSMUST00000006035 1377 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Trim56Q80VI1 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Trim56Q80VI1 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Trim56Q80VI1 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Trim56Q80VI1 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Trim56Q80VI1 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
Trim56Q80VI1 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC21.62■■□□□ 1.05
Trim56Q80VI1 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Trim56Q80VI1 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Trim56Q80VI1 Gm9194-201ENSMUST00000220749 1447 ntBASIC21.62■■□□□ 1.05
Trim56Q80VI1 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
Retrieved 100 of 76,532 protein–RNA pairs in 31.8 ms