Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Upf3aQ3ULJ3 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Upf3aQ3ULJ3 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Upf3aQ3ULJ3 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC19.34■□□□□ 0.69
Upf3aQ3ULJ3 Gm42545-201ENSMUST00000202755 922 ntBASIC19.34■□□□□ 0.69
Upf3aQ3ULJ3 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Upf3aQ3ULJ3 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Upf3aQ3ULJ3 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Upf3aQ3ULJ3 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Upf3aQ3ULJ3 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Upf3aQ3ULJ3 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC19.33■□□□□ 0.68
Upf3aQ3ULJ3 Gm37292-201ENSMUST00000192062 758 ntBASIC19.33■□□□□ 0.68
Upf3aQ3ULJ3 Gm16042-201ENSMUST00000204813 1247 ntBASIC19.33■□□□□ 0.68
Upf3aQ3ULJ3 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC19.33■□□□□ 0.68
Upf3aQ3ULJ3 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC19.33■□□□□ 0.68
Upf3aQ3ULJ3 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Upf3aQ3ULJ3 Glipr2-201ENSMUST00000030202 2320 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Upf3aQ3ULJ3 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Upf3aQ3ULJ3 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Upf3aQ3ULJ3 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Upf3aQ3ULJ3 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
Upf3aQ3ULJ3 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
Upf3aQ3ULJ3 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Upf3aQ3ULJ3 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Upf3aQ3ULJ3 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Upf3aQ3ULJ3 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Upf3aQ3ULJ3 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Upf3aQ3ULJ3 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
Upf3aQ3ULJ3 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Upf3aQ3ULJ3 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Upf3aQ3ULJ3 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
Upf3aQ3ULJ3 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC19.31■□□□□ 0.68
Upf3aQ3ULJ3 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC19.31■□□□□ 0.68
Upf3aQ3ULJ3 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Upf3aQ3ULJ3 Nudt22-203ENSMUST00000180765 1073 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
Upf3aQ3ULJ3 Gm10231-201ENSMUST00000181584 441 ntBASIC19.31■□□□□ 0.68
Upf3aQ3ULJ3 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Upf3aQ3ULJ3 Gm10175-202ENSMUST00000208752 441 ntBASIC19.31■□□□□ 0.68
Upf3aQ3ULJ3 Arhgef4-208ENSMUST00000211073 171 ntBASIC19.31■□□□□ 0.68
Upf3aQ3ULJ3 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC19.31■□□□□ 0.68
Upf3aQ3ULJ3 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
Upf3aQ3ULJ3 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Upf3aQ3ULJ3 Cldn24-201ENSMUST00000079639 663 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
Upf3aQ3ULJ3 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC19.31■□□□□ 0.68
Upf3aQ3ULJ3 AC123857.1-201ENSMUST00000181053 2312 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Upf3aQ3ULJ3 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Upf3aQ3ULJ3 Pon1-201ENSMUST00000002663 1513 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Upf3aQ3ULJ3 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Upf3aQ3ULJ3 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC19.3■□□□□ 0.68
Upf3aQ3ULJ3 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Upf3aQ3ULJ3 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
Upf3aQ3ULJ3 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Upf3aQ3ULJ3 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
Upf3aQ3ULJ3 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Upf3aQ3ULJ3 Atp5d-203ENSMUST00000105367 1410 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
Upf3aQ3ULJ3 Rapgef3-207ENSMUST00000134885 1422 ntTSL 5 BASIC19.3■□□□□ 0.68
Upf3aQ3ULJ3 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Upf3aQ3ULJ3 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC19.3■□□□□ 0.68
Upf3aQ3ULJ3 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Upf3aQ3ULJ3 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Upf3aQ3ULJ3 Mdfic-202ENSMUST00000120512 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Upf3aQ3ULJ3 Glrx5-201ENSMUST00000021522 2925 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Upf3aQ3ULJ3 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Upf3aQ3ULJ3 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Upf3aQ3ULJ3 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
Upf3aQ3ULJ3 Krt79-201ENSMUST00000023799 2097 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Upf3aQ3ULJ3 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Upf3aQ3ULJ3 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Upf3aQ3ULJ3 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
Upf3aQ3ULJ3 Fam19a5-201ENSMUST00000068088 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Upf3aQ3ULJ3 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
Upf3aQ3ULJ3 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Upf3aQ3ULJ3 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Upf3aQ3ULJ3 Gm37805-201ENSMUST00000192612 1094 ntBASIC19.29■□□□□ 0.68
Upf3aQ3ULJ3 Hebp1-201ENSMUST00000045855 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Upf3aQ3ULJ3 Kcng2-201ENSMUST00000077962 2813 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
Upf3aQ3ULJ3 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Upf3aQ3ULJ3 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Upf3aQ3ULJ3 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Upf3aQ3ULJ3 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Upf3aQ3ULJ3 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
Upf3aQ3ULJ3 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Upf3aQ3ULJ3 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
Upf3aQ3ULJ3 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Upf3aQ3ULJ3 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Upf3aQ3ULJ3 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Upf3aQ3ULJ3 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Upf3aQ3ULJ3 Gm8668-201ENSMUST00000120559 1447 ntBASIC19.27■□□□□ 0.68
Upf3aQ3ULJ3 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.68
Upf3aQ3ULJ3 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Upf3aQ3ULJ3 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Upf3aQ3ULJ3 B230208B08Rik-201ENSMUST00000173049 404 ntTSL 3 BASIC19.27■□□□□ 0.68
Upf3aQ3ULJ3 Mir6349-201ENSMUST00000184059 97 ntBASIC19.27■□□□□ 0.68
Upf3aQ3ULJ3 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Upf3aQ3ULJ3 Gm30025-201ENSMUST00000218555 728 ntBASIC19.27■□□□□ 0.68
Upf3aQ3ULJ3 AC156016.1-201ENSMUST00000227190 1035 ntBASIC19.27■□□□□ 0.68
Upf3aQ3ULJ3 Odf3b-204ENSMUST00000227834 930 ntBASIC19.27■□□□□ 0.68
Upf3aQ3ULJ3 Bax-201ENSMUST00000033093 867 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Upf3aQ3ULJ3 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC19.27■□□□□ 0.68
Upf3aQ3ULJ3 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC19.27■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 33 ms