Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Cdx2P43241 Otx2os1-204ENSMUST00000227221 751 ntBASIC17.46■□□□□ 0.39
Cdx2P43241 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.39
Cdx2P43241 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Cdx2P43241 Npw-201ENSMUST00000095544 638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Cdx2P43241 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Cdx2P43241 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Cdx2P43241 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC17.46■□□□□ 0.39
Cdx2P43241 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Cdx2P43241 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Cdx2P43241 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
Cdx2P43241 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC17.45■□□□□ 0.38
Cdx2P43241 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Cdx2P43241 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Cdx2P43241 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Cdx2P43241 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Cdx2P43241 Gm12382-201ENSMUST00000122005 922 ntBASIC17.45■□□□□ 0.38
Cdx2P43241 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Cdx2P43241 Gm32151-201ENSMUST00000223521 915 ntTSL 5 BASIC17.45■□□□□ 0.38
Cdx2P43241 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
Cdx2P43241 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Cdx2P43241 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Cdx2P43241 Lrrc38-201ENSMUST00000052458 2324 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Cdx2P43241 Atp5d-203ENSMUST00000105367 1410 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
Cdx2P43241 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
Cdx2P43241 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Cdx2P43241 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Cdx2P43241 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Cdx2P43241 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Cdx2P43241 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Cdx2P43241 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC17.44■□□□□ 0.38
Cdx2P43241 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Cdx2P43241 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Cdx2P43241 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
Cdx2P43241 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Cdx2P43241 Gm7889-201ENSMUST00000185591 958 ntBASIC17.44■□□□□ 0.38
Cdx2P43241 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC17.44■□□□□ 0.38
Cdx2P43241 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC17.44■□□□□ 0.38
Cdx2P43241 Gm3375-201ENSMUST00000203929 796 ntBASIC17.44■□□□□ 0.38
Cdx2P43241 Eif3h-201ENSMUST00000022925 1295 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Cdx2P43241 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Cdx2P43241 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Cdx2P43241 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Cdx2P43241 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Cdx2P43241 Alg5-201ENSMUST00000044567 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Cdx2P43241 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
Cdx2P43241 Prkra-201ENSMUST00000002808 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Cdx2P43241 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Cdx2P43241 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
Cdx2P43241 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
Cdx2P43241 Ccdc112-201ENSMUST00000072835 2801 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
Cdx2P43241 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
Cdx2P43241 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC17.43■□□□□ 0.38
Cdx2P43241 Ramp2-202ENSMUST00000122006 899 ntTSL 2 BASIC17.43■□□□□ 0.38
Cdx2P43241 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
Cdx2P43241 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC17.43■□□□□ 0.38
Cdx2P43241 Pdcd2-201ENSMUST00000054450 1120 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Cdx2P43241 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Cdx2P43241 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC17.43■□□□□ 0.38
Cdx2P43241 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC17.43■□□□□ 0.38
Cdx2P43241 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
Cdx2P43241 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
Cdx2P43241 Cyb5a-204ENSMUST00000160180 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Cdx2P43241 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Cdx2P43241 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
Cdx2P43241 Mdfic-202ENSMUST00000120512 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Cdx2P43241 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Cdx2P43241 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
Cdx2P43241 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
Cdx2P43241 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC17.42■□□□□ 0.38
Cdx2P43241 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
Cdx2P43241 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC17.42■□□□□ 0.38
Cdx2P43241 Dbndd2-201ENSMUST00000017878 1338 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
Cdx2P43241 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC17.42■□□□□ 0.38
Cdx2P43241 Golph3-202ENSMUST00000226517 2359 ntBASIC17.42■□□□□ 0.38
Cdx2P43241 Tmem79-202ENSMUST00000107552 2063 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
Cdx2P43241 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC17.41■□□□□ 0.38
Cdx2P43241 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC17.41■□□□□ 0.38
Cdx2P43241 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
Cdx2P43241 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Cdx2P43241 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Cdx2P43241 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Cdx2P43241 0610010K14Rik-207ENSMUST00000108577 659 ntTSL 5 BASIC17.41■□□□□ 0.38
Cdx2P43241 Mir6349-201ENSMUST00000184059 97 ntBASIC17.41■□□□□ 0.38
Cdx2P43241 Gm21362-201ENSMUST00000194272 928 ntBASIC17.41■□□□□ 0.38
Cdx2P43241 Hebp1-201ENSMUST00000045855 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Cdx2P43241 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Cdx2P43241 3110070M22Rik-201ENSMUST00000099148 1123 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
Cdx2P43241 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Cdx2P43241 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC17.41■□□□□ 0.38
Cdx2P43241 Hist1h2bh-201ENSMUST00000224359 1679 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
Cdx2P43241 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Cdx2P43241 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
Cdx2P43241 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Cdx2P43241 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Cdx2P43241 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC17.4■□□□□ 0.38
Cdx2P43241 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Cdx2P43241 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
Cdx2P43241 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC17.4■□□□□ 0.38
Cdx2P43241 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 24.6 ms