Protein–RNA interactions for Protein: P13705

Msh3, DNA mismatch repair protein Msh3, mousemouse

Predictions only

Length 1,091 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh3P13705 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC20.23■□□□□ 0.83
Msh3P13705 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC20.23■□□□□ 0.83
Msh3P13705 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Msh3P13705 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC20.23■□□□□ 0.83
Msh3P13705 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Msh3P13705 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
Msh3P13705 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Msh3P13705 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Msh3P13705 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
Msh3P13705 Gm36033-202ENSMUST00000214827 745 ntTSL 2 BASIC20.22■□□□□ 0.83
Msh3P13705 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Msh3P13705 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Msh3P13705 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Msh3P13705 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Msh3P13705 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Msh3P13705 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
Msh3P13705 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC20.21■□□□□ 0.83
Msh3P13705 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Msh3P13705 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Msh3P13705 Gm11549-201ENSMUST00000124606 2829 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Msh3P13705 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC20.21■□□□□ 0.83
Msh3P13705 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Msh3P13705 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Msh3P13705 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Msh3P13705 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC20.2■□□□□ 0.82
Msh3P13705 Stac2-201ENSMUST00000017544 3050 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Msh3P13705 Immp2l-203ENSMUST00000134965 977 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
Msh3P13705 Tspan2os-201ENSMUST00000146624 590 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Msh3P13705 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Msh3P13705 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC20.2■□□□□ 0.82
Msh3P13705 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Msh3P13705 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Msh3P13705 F8a-201ENSMUST00000105111 2505 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
Msh3P13705 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Msh3P13705 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Msh3P13705 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Msh3P13705 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Msh3P13705 Orai3-201ENSMUST00000061587 1996 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Msh3P13705 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Msh3P13705 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
Msh3P13705 AC140264.2-202ENSMUST00000218746 817 ntBASIC20.19■□□□□ 0.82
Msh3P13705 Grk6-206ENSMUST00000224995 2971 ntBASIC20.19■□□□□ 0.82
Msh3P13705 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Msh3P13705 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Msh3P13705 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Msh3P13705 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
Msh3P13705 Ndufa10-201ENSMUST00000027478 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Msh3P13705 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Msh3P13705 Eva1a-201ENSMUST00000042974 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Msh3P13705 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Msh3P13705 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Msh3P13705 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC20.18■□□□□ 0.82
Msh3P13705 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Msh3P13705 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Msh3P13705 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC20.18■□□□□ 0.82
Msh3P13705 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Msh3P13705 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Msh3P13705 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Msh3P13705 Ttc32-201ENSMUST00000085741 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Msh3P13705 Cfap206-202ENSMUST00000108136 1688 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Msh3P13705 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Msh3P13705 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
Msh3P13705 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Msh3P13705 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Msh3P13705 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC20.17■□□□□ 0.82
Msh3P13705 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Msh3P13705 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
Msh3P13705 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Msh3P13705 Mir5133-201ENSMUST00000174955 77 ntBASIC20.17■□□□□ 0.82
Msh3P13705 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Msh3P13705 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Msh3P13705 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Msh3P13705 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Msh3P13705 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Msh3P13705 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Msh3P13705 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
Msh3P13705 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Msh3P13705 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC20.16■□□□□ 0.82
Msh3P13705 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Msh3P13705 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Msh3P13705 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Msh3P13705 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Msh3P13705 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Msh3P13705 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
Msh3P13705 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC20.16■□□□□ 0.82
Msh3P13705 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
Msh3P13705 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC20.16■□□□□ 0.82
Msh3P13705 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
Msh3P13705 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Msh3P13705 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Msh3P13705 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Msh3P13705 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Msh3P13705 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Msh3P13705 Fam105a-203ENSMUST00000226170 3043 ntBASIC20.16■□□□□ 0.82
Msh3P13705 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
Msh3P13705 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
Msh3P13705 AC164629.5-201ENSMUST00000220387 632 ntBASIC20.15■□□□□ 0.82
Msh3P13705 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Msh3P13705 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Msh3P13705 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 22 ms