Protein–RNA interactions for Protein: P0C0A3

Chmp6, Charged multivesicular body protein 6, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp6P0C0A3 Ntmt1-201ENSMUST00000041830 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Chmp6P0C0A3 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Chmp6P0C0A3 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Chmp6P0C0A3 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Chmp6P0C0A3 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Chmp6P0C0A3 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Chmp6P0C0A3 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
Chmp6P0C0A3 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Chmp6P0C0A3 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Chmp6P0C0A3 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Chmp6P0C0A3 Gm10167-201ENSMUST00000150411 1479 ntBASIC19.9■□□□□ 0.78
Chmp6P0C0A3 Gm38342-201ENSMUST00000195710 2980 ntBASIC19.9■□□□□ 0.78
Chmp6P0C0A3 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
Chmp6P0C0A3 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC19.9■□□□□ 0.78
Chmp6P0C0A3 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Chmp6P0C0A3 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Chmp6P0C0A3 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
Chmp6P0C0A3 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC19.89■□□□□ 0.78
Chmp6P0C0A3 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
Chmp6P0C0A3 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Chmp6P0C0A3 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Chmp6P0C0A3 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC19.89■□□□□ 0.77
Chmp6P0C0A3 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Chmp6P0C0A3 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Chmp6P0C0A3 Gm19094-201ENSMUST00000209791 1246 ntBASIC19.89■□□□□ 0.77
Chmp6P0C0A3 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Chmp6P0C0A3 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC19.89■□□□□ 0.77
Chmp6P0C0A3 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Chmp6P0C0A3 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Chmp6P0C0A3 Hist1h2ao-201ENSMUST00000091745 480 ntAPPRIS P1 BASIC19.89■□□□□ 0.77
Chmp6P0C0A3 Uhmk1-202ENSMUST00000123399 7775 ntTSL 5 BASIC19.89■□□□□ 0.77
Chmp6P0C0A3 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
Chmp6P0C0A3 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC19.89■□□□□ 0.77
Chmp6P0C0A3 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Chmp6P0C0A3 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Chmp6P0C0A3 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Chmp6P0C0A3 Mir5133-201ENSMUST00000174955 77 ntBASIC19.88■□□□□ 0.77
Chmp6P0C0A3 Krtcap3-205ENSMUST00000201625 902 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
Chmp6P0C0A3 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC19.88■□□□□ 0.77
Chmp6P0C0A3 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
Chmp6P0C0A3 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Chmp6P0C0A3 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC19.88■□□□□ 0.77
Chmp6P0C0A3 Tlcd1-202ENSMUST00000098545 2897 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Chmp6P0C0A3 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Chmp6P0C0A3 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Chmp6P0C0A3 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Chmp6P0C0A3 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
Chmp6P0C0A3 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Chmp6P0C0A3 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Chmp6P0C0A3 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
Chmp6P0C0A3 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Chmp6P0C0A3 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
Chmp6P0C0A3 Smim1-209ENSMUST00000145527 562 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
Chmp6P0C0A3 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC19.87■□□□□ 0.77
Chmp6P0C0A3 Man2a1-201ENSMUST00000086723 6991 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Chmp6P0C0A3 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC19.87■□□□□ 0.77
Chmp6P0C0A3 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Chmp6P0C0A3 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
Chmp6P0C0A3 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Chmp6P0C0A3 Prmt3-201ENSMUST00000032715 2507 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Chmp6P0C0A3 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Chmp6P0C0A3 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Chmp6P0C0A3 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Chmp6P0C0A3 Caml-201ENSMUST00000021963 1382 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Chmp6P0C0A3 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Chmp6P0C0A3 Gm35558-201ENSMUST00000222675 2219 ntBASIC19.86■□□□□ 0.77
Chmp6P0C0A3 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Chmp6P0C0A3 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Chmp6P0C0A3 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Chmp6P0C0A3 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Chmp6P0C0A3 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Chmp6P0C0A3 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC19.86■□□□□ 0.77
Chmp6P0C0A3 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Chmp6P0C0A3 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Chmp6P0C0A3 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
Chmp6P0C0A3 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Chmp6P0C0A3 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Chmp6P0C0A3 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Chmp6P0C0A3 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC19.86■□□□□ 0.77
Chmp6P0C0A3 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
Chmp6P0C0A3 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Chmp6P0C0A3 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Chmp6P0C0A3 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
Chmp6P0C0A3 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
Chmp6P0C0A3 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC19.85■□□□□ 0.77
Chmp6P0C0A3 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Chmp6P0C0A3 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Chmp6P0C0A3 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
Chmp6P0C0A3 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Chmp6P0C0A3 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC19.85■□□□□ 0.77
Chmp6P0C0A3 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Chmp6P0C0A3 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Chmp6P0C0A3 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Chmp6P0C0A3 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
Chmp6P0C0A3 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
Chmp6P0C0A3 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Chmp6P0C0A3 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Chmp6P0C0A3 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Chmp6P0C0A3 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Chmp6P0C0A3 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 26 ms