Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Hoxd3P09027 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Hoxd3P09027 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC14.21□□□□□ -0.13
Hoxd3P09027 Stard6-203ENSMUST00000168249 1167 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Hoxd3P09027 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Hoxd3P09027 Gm22240-201ENSMUST00000175225 82 ntBASIC14.21□□□□□ -0.13
Hoxd3P09027 Gm44878-201ENSMUST00000205812 1295 ntBASIC14.21□□□□□ -0.13
Hoxd3P09027 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC14.21□□□□□ -0.13
Hoxd3P09027 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Hoxd3P09027 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Hoxd3P09027 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Hoxd3P09027 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Hoxd3P09027 Gabarap-201ENSMUST00000018711 1351 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Hoxd3P09027 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Hoxd3P09027 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Hoxd3P09027 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Hoxd3P09027 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
Hoxd3P09027 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Hoxd3P09027 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC14.2□□□□□ -0.14
Hoxd3P09027 Gm13168-201ENSMUST00000121771 632 ntBASIC14.2□□□□□ -0.14
Hoxd3P09027 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Hoxd3P09027 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Hoxd3P09027 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Hoxd3P09027 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Hoxd3P09027 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Hoxd3P09027 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Hoxd3P09027 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Hoxd3P09027 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Hoxd3P09027 Tsc22d1-214ENSMUST00000177207 1476 ntTSL 3 BASIC14.19□□□□□ -0.14
Hoxd3P09027 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Hoxd3P09027 Gm18688-201ENSMUST00000204695 1859 ntBASIC14.19□□□□□ -0.14
Hoxd3P09027 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Hoxd3P09027 Srrm2-209ENSMUST00000190686 8864 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
Hoxd3P09027 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Hoxd3P09027 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Hoxd3P09027 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Hoxd3P09027 Gm27275-201ENSMUST00000184318 272 ntBASIC14.19□□□□□ -0.14
Hoxd3P09027 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Hoxd3P09027 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Hoxd3P09027 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Hoxd3P09027 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
Hoxd3P09027 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Hoxd3P09027 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Hoxd3P09027 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
Hoxd3P09027 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
Hoxd3P09027 Csnk2a2-203ENSMUST00000212214 6779 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Hoxd3P09027 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Hoxd3P09027 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Hoxd3P09027 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Hoxd3P09027 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Hoxd3P09027 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC14.18□□□□□ -0.14
Hoxd3P09027 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Hoxd3P09027 Dbndd1-202ENSMUST00000176286 1344 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Hoxd3P09027 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Hoxd3P09027 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Hoxd3P09027 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Hoxd3P09027 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC14.18□□□□□ -0.14
Hoxd3P09027 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Hoxd3P09027 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Hoxd3P09027 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC14.18□□□□□ -0.14
Hoxd3P09027 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Hoxd3P09027 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Hoxd3P09027 Depdc7-201ENSMUST00000028595 1801 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Hoxd3P09027 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Hoxd3P09027 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Hoxd3P09027 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC14.17□□□□□ -0.14
Hoxd3P09027 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Hoxd3P09027 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC14.17□□□□□ -0.14
Hoxd3P09027 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Hoxd3P09027 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC14.17□□□□□ -0.14
Hoxd3P09027 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Hoxd3P09027 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Hoxd3P09027 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Hoxd3P09027 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Hoxd3P09027 Selenos-201ENSMUST00000101801 1191 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Hoxd3P09027 Atp23-202ENSMUST00000168520 1043 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Hoxd3P09027 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Hoxd3P09027 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Hoxd3P09027 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
Hoxd3P09027 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC14.17□□□□□ -0.14
Hoxd3P09027 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Hoxd3P09027 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Hoxd3P09027 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC14.17□□□□□ -0.14
Hoxd3P09027 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Hoxd3P09027 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Hoxd3P09027 Man2a2-201ENSMUST00000098346 6554 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Hoxd3P09027 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
Hoxd3P09027 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Hoxd3P09027 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC14.16□□□□□ -0.14
Hoxd3P09027 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Hoxd3P09027 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Hoxd3P09027 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Hoxd3P09027 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Hoxd3P09027 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Hoxd3P09027 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Hoxd3P09027 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Hoxd3P09027 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Hoxd3P09027 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Hoxd3P09027 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC14.16□□□□□ -0.14
Hoxd3P09027 AC140264.2-202ENSMUST00000218746 817 ntBASIC14.16□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 35.7 ms