Protein–RNA interactions for Protein: B9EHT4

Clip3, CAP-Gly domain-containing linker protein 3, mousemouse

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clip3B9EHT4 Ptprs-201ENSMUST00000067538 6855 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Clip3B9EHT4 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Clip3B9EHT4 Tbx2-201ENSMUST00000000095 3626 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Clip3B9EHT4 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Clip3B9EHT4 Pik3r2-201ENSMUST00000034296 3165 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Clip3B9EHT4 Gm12441-201ENSMUST00000121806 588 ntBASIC17.67■□□□□ 0.42
Clip3B9EHT4 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Clip3B9EHT4 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC17.67■□□□□ 0.42
Clip3B9EHT4 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC17.67■□□□□ 0.42
Clip3B9EHT4 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC17.67■□□□□ 0.42
Clip3B9EHT4 Fbxo44-201ENSMUST00000057907 1829 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Clip3B9EHT4 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Clip3B9EHT4 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Clip3B9EHT4 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
Clip3B9EHT4 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Clip3B9EHT4 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Clip3B9EHT4 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Clip3B9EHT4 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC17.67■□□□□ 0.42
Clip3B9EHT4 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Clip3B9EHT4 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Clip3B9EHT4 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Clip3B9EHT4 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
Clip3B9EHT4 Map3k10-202ENSMUST00000108341 3403 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Clip3B9EHT4 Gm43859-201ENSMUST00000200075 1412 ntBASIC17.66■□□□□ 0.42
Clip3B9EHT4 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Clip3B9EHT4 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Clip3B9EHT4 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Clip3B9EHT4 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Clip3B9EHT4 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Clip3B9EHT4 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Clip3B9EHT4 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Clip3B9EHT4 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
Clip3B9EHT4 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Clip3B9EHT4 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Clip3B9EHT4 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Clip3B9EHT4 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Clip3B9EHT4 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Clip3B9EHT4 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Clip3B9EHT4 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
Clip3B9EHT4 Gm4968-201ENSMUST00000071458 858 ntBASIC17.65■□□□□ 0.42
Clip3B9EHT4 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Clip3B9EHT4 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Clip3B9EHT4 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Clip3B9EHT4 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Clip3B9EHT4 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Clip3B9EHT4 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Clip3B9EHT4 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
Clip3B9EHT4 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
Clip3B9EHT4 Rps2-ps11-201ENSMUST00000195283 868 ntBASIC17.64■□□□□ 0.41
Clip3B9EHT4 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Clip3B9EHT4 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC17.64■□□□□ 0.41
Clip3B9EHT4 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
Clip3B9EHT4 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Clip3B9EHT4 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Clip3B9EHT4 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC17.64■□□□□ 0.41
Clip3B9EHT4 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC17.64■□□□□ 0.41
Clip3B9EHT4 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
Clip3B9EHT4 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Clip3B9EHT4 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC17.64■□□□□ 0.41
Clip3B9EHT4 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Clip3B9EHT4 Gm19439-201ENSMUST00000198195 2273 ntBASIC17.64■□□□□ 0.41
Clip3B9EHT4 Rab20-201ENSMUST00000033900 1392 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Clip3B9EHT4 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Clip3B9EHT4 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Clip3B9EHT4 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Clip3B9EHT4 Mtcl1-202ENSMUST00000097291 7274 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Clip3B9EHT4 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Clip3B9EHT4 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Clip3B9EHT4 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Clip3B9EHT4 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Clip3B9EHT4 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
Clip3B9EHT4 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC17.63■□□□□ 0.41
Clip3B9EHT4 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Clip3B9EHT4 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC17.63■□□□□ 0.41
Clip3B9EHT4 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC17.63■□□□□ 0.41
Clip3B9EHT4 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Clip3B9EHT4 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Clip3B9EHT4 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Clip3B9EHT4 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Clip3B9EHT4 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Clip3B9EHT4 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Clip3B9EHT4 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Clip3B9EHT4 Gm10167-201ENSMUST00000150411 1479 ntBASIC17.63■□□□□ 0.41
Clip3B9EHT4 Gm37563-201ENSMUST00000192580 1513 ntBASIC17.62■□□□□ 0.41
Clip3B9EHT4 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
Clip3B9EHT4 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Clip3B9EHT4 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
Clip3B9EHT4 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Clip3B9EHT4 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Clip3B9EHT4 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC17.62■□□□□ 0.41
Clip3B9EHT4 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC17.62■□□□□ 0.41
Clip3B9EHT4 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Clip3B9EHT4 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Clip3B9EHT4 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC17.62■□□□□ 0.41
Clip3B9EHT4 Gm44672-201ENSMUST00000206944 1098 ntBASIC17.62■□□□□ 0.41
Clip3B9EHT4 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Clip3B9EHT4 Gm13509-201ENSMUST00000119733 1308 ntBASIC17.62■□□□□ 0.41
Clip3B9EHT4 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Clip3B9EHT4 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Clip3B9EHT4 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 29.2 ms