Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Akap2-201ENSMUST00000043456 7211 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
Traf1P39428 CT030185.2-201ENSMUST00000222614 1310 ntBASIC8.27□□□□□ -1.09
Traf1P39428 Gm37420-201ENSMUST00000195332 2912 ntBASIC8.26□□□□□ -1.09
Traf1P39428 AC122426.2-201ENSMUST00000216522 2947 ntBASIC8.26□□□□□ -1.09
Traf1P39428 Gm37863-201ENSMUST00000194911 1457 ntBASIC8.26□□□□□ -1.09
Traf1P39428 Gm10143-202ENSMUST00000150038 3332 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
Traf1P39428 Zfp976-201ENSMUST00000098503 1976 ntAPPRIS P1 TSL 2 BASIC8.26□□□□□ -1.09
Traf1P39428 Gm4847-201ENSMUST00000046662 3012 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
Traf1P39428 Gm43429-201ENSMUST00000197889 2251 ntBASIC8.26□□□□□ -1.09
Traf1P39428 Mxi1-203ENSMUST00000111737 4843 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
Traf1P39428 Gm15462-201ENSMUST00000133653 4580 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
Traf1P39428 Gm25379-201ENSMUST00000104338 114 ntBASIC8.26□□□□□ -1.09
Traf1P39428 Gm13768-201ENSMUST00000116469 929 ntBASIC8.26□□□□□ -1.09
Traf1P39428 Gm13196-201ENSMUST00000118297 379 ntBASIC8.26□□□□□ -1.09
Traf1P39428 Gm8662-201ENSMUST00000118644 574 ntBASIC8.26□□□□□ -1.09
Traf1P39428 Gm16284-201ENSMUST00000140995 400 ntBASIC8.26□□□□□ -1.09
Traf1P39428 4930527B05Rik-201ENSMUST00000141593 602 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
Traf1P39428 Gm15265-202ENSMUST00000143287 814 ntTSL 3 BASIC8.26□□□□□ -1.09
Traf1P39428 Gm12227-201ENSMUST00000147847 563 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
Traf1P39428 Gm25116-201ENSMUST00000157191 122 ntBASIC8.26□□□□□ -1.09
Traf1P39428 Gm26323-201ENSMUST00000157743 175 ntBASIC8.26□□□□□ -1.09
Traf1P39428 Mgst2-203ENSMUST00000159554 486 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
Traf1P39428 Arpp19-204ENSMUST00000167885 540 ntTSL 3 BASIC8.26□□□□□ -1.09
Traf1P39428 Smarca2-213ENSMUST00000176698 955 ntTSL 5 BASIC8.26□□□□□ -1.09
Traf1P39428 Gm6931-201ENSMUST00000183103 371 ntBASIC8.26□□□□□ -1.09
Traf1P39428 Mir7212-201ENSMUST00000184098 61 ntBASIC8.26□□□□□ -1.09
Traf1P39428 Mir8105-201ENSMUST00000184718 89 ntBASIC8.26□□□□□ -1.09
Traf1P39428 1700123O21Rik-201ENSMUST00000190515 677 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
Traf1P39428 Gm37556-201ENSMUST00000193877 468 ntTSL 5 BASIC8.26□□□□□ -1.09
Traf1P39428 Gm43243-201ENSMUST00000199964 278 ntBASIC8.26□□□□□ -1.09
Traf1P39428 Fabp7-201ENSMUST00000020024 804 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
Traf1P39428 Gm32816-202ENSMUST00000206497 496 ntTSL 5 BASIC8.26□□□□□ -1.09
Traf1P39428 Gm4585-201ENSMUST00000207218 452 ntBASIC8.26□□□□□ -1.09
Traf1P39428 Gm44812-202ENSMUST00000208999 1285 ntTSL 5 BASIC8.26□□□□□ -1.09
Traf1P39428 Olfr976-203ENSMUST00000217360 1164 ntAPPRIS ALT2 BASIC8.26□□□□□ -1.09
Traf1P39428 4930521O17Rik-201ENSMUST00000219339 491 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
Traf1P39428 Olfr535-201ENSMUST00000074897 991 ntAPPRIS P1 BASIC8.26□□□□□ -1.09
Traf1P39428 Gm23734-201ENSMUST00000083753 109 ntBASIC8.26□□□□□ -1.09
Traf1P39428 1700026J12Rik-201ENSMUST00000098226 1127 ntTSL 5 BASIC8.26□□□□□ -1.09
Traf1P39428 AC154270.2-201ENSMUST00000226755 2306 ntBASIC8.26□□□□□ -1.09
Traf1P39428 Kcnu1-202ENSMUST00000120653 1446 ntTSL 1 (best) BASIC8.26□□□□□ -1.09
Traf1P39428 Myot-202ENSMUST00000115498 2087 ntAPPRIS P1 TSL 5 BASIC8.26□□□□□ -1.09
Traf1P39428 Hyal5-202ENSMUST00000200968 2070 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
Traf1P39428 Cntrl-204ENSMUST00000113033 1817 ntTSL 5 BASIC8.26□□□□□ -1.09
Traf1P39428 Smarca2-242ENSMUST00000208751 1846 ntTSL 5 BASIC8.26□□□□□ -1.09
Traf1P39428 Tnfsf4-201ENSMUST00000028024 1842 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
Traf1P39428 Gm12919-201ENSMUST00000119855 1594 ntBASIC8.26□□□□□ -1.09
Traf1P39428 1700024B05Rik-201ENSMUST00000064162 1576 ntAPPRIS P5 TSL 1 (best) BASIC8.26□□□□□ -1.09
Traf1P39428 Gm44022-201ENSMUST00000203708 5429 ntBASIC8.26□□□□□ -1.09
Traf1P39428 Cfap61-206ENSMUST00000133433 3998 ntAPPRIS P1 TSL 5 BASIC8.26□□□□□ -1.09
Traf1P39428 Ints2-202ENSMUST00000108039 4369 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
Traf1P39428 Mlip-211ENSMUST00000184415 1726 ntAPPRIS ALT2 TSL 5 BASIC8.26□□□□□ -1.09
Traf1P39428 Gm45001-201ENSMUST00000208279 2515 ntBASIC8.26□□□□□ -1.09
Traf1P39428 Sncaip-206ENSMUST00000178678 3724 ntAPPRIS ALT2 TSL 1 (best) BASIC8.26□□□□□ -1.09
Traf1P39428 Oxgr1-201ENSMUST00000058213 3732 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
Traf1P39428 St18-201ENSMUST00000043578 5862 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
Traf1P39428 Olfr1215-202ENSMUST00000214809 2683 ntAPPRIS P1 TSL 5 BASIC8.26□□□□□ -1.09
Traf1P39428 Gm45221-201ENSMUST00000207822 2272 ntBASIC8.26□□□□□ -1.09
Traf1P39428 Mep1b-201ENSMUST00000082235 2286 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
Traf1P39428 Btnl10-202ENSMUST00000069941 4400 ntAPPRIS P1 TSL 1 (best) BASIC8.26□□□□□ -1.09
Traf1P39428 Serpinb9-201ENSMUST00000006391 3397 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
Traf1P39428 AC161884.1-201ENSMUST00000225436 2174 ntBASIC8.25□□□□□ -1.09
Traf1P39428 AC132465.2-201ENSMUST00000218673 2728 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
Traf1P39428 Gm37278-201ENSMUST00000191619 2872 ntBASIC8.25□□□□□ -1.09
Traf1P39428 Gm3072-201ENSMUST00000167712 1395 ntAPPRIS P1 TSL 5 BASIC8.25□□□□□ -1.09
Traf1P39428 Gpbp1l1-201ENSMUST00000030460 3588 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
Traf1P39428 Zbtb14-202ENSMUST00000112674 3743 ntAPPRIS P1 TSL 3 BASIC8.25□□□□□ -1.09
Traf1P39428 Gm31805-201ENSMUST00000211921 4031 ntTSL 3 BASIC8.25□□□□□ -1.09
Traf1P39428 Pcyt1b-201ENSMUST00000045898 4888 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
Traf1P39428 Zfp385b-211ENSMUST00000171063 2668 ntAPPRIS ALT1 TSL 5 BASIC8.25□□□□□ -1.09
Traf1P39428 Gm5834-201ENSMUST00000126680 1026 ntBASIC8.25□□□□□ -1.09
Traf1P39428 Gm13982-201ENSMUST00000138372 755 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
Traf1P39428 Gm2709-201ENSMUST00000142979 350 ntBASIC8.25□□□□□ -1.09
Traf1P39428 Gm11840-201ENSMUST00000156947 696 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
Traf1P39428 Gm24057-201ENSMUST00000158616 302 ntBASIC8.25□□□□□ -1.09
Traf1P39428 Gm3760-201ENSMUST00000167475 804 ntBASIC8.25□□□□□ -1.09
Traf1P39428 Gm3047-202ENSMUST00000177998 618 ntAPPRIS ALT2 TSL 5 BASIC8.25□□□□□ -1.09
Traf1P39428 Gm8297-203ENSMUST00000178389 618 ntAPPRIS ALT2 TSL 5 BASIC8.25□□□□□ -1.09
Traf1P39428 Gm3460-202ENSMUST00000178927 618 ntAPPRIS ALT2 TSL 5 BASIC8.25□□□□□ -1.09
Traf1P39428 Gm21103-203ENSMUST00000179042 618 ntAPPRIS ALT2 TSL 5 BASIC8.25□□□□□ -1.09
Traf1P39428 Gm8159-203ENSMUST00000179231 618 ntAPPRIS ALT2 TSL 5 BASIC8.25□□□□□ -1.09
Traf1P39428 Gm3029-202ENSMUST00000179327 618 ntAPPRIS ALT2 TSL 5 BASIC8.25□□□□□ -1.09
Traf1P39428 Polr2k-202ENSMUST00000180159 489 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
Traf1P39428 Gm26729-201ENSMUST00000180744 352 ntBASIC8.25□□□□□ -1.09
Traf1P39428 Gm28556-201ENSMUST00000187489 673 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
Traf1P39428 4930568A12Rik-202ENSMUST00000188292 926 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
Traf1P39428 Gm29566-201ENSMUST00000190627 457 ntTSL 5 BASIC8.25□□□□□ -1.09
Traf1P39428 Ighv5-5-201ENSMUST00000193826 329 ntBASIC8.25□□□□□ -1.09
Traf1P39428 Gm45345-201ENSMUST00000211427 555 ntTSL 2 BASIC8.25□□□□□ -1.09
Traf1P39428 AC166902.2-201ENSMUST00000215193 837 ntTSL 5 BASIC8.25□□□□□ -1.09
Traf1P39428 D730003K21Rik-202ENSMUST00000217456 533 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
Traf1P39428 AC155709.1-201ENSMUST00000218794 162 ntBASIC8.25□□□□□ -1.09
Traf1P39428 CT009728.1-201ENSMUST00000225228 1050 ntBASIC8.25□□□□□ -1.09
Traf1P39428 AC124489.1-201ENSMUST00000225852 526 ntBASIC8.25□□□□□ -1.09
Traf1P39428 3110018I06Rik-201ENSMUST00000082269 1005 ntAPPRIS P1 BASIC8.25□□□□□ -1.09
Traf1P39428 Clcn7-204ENSMUST00000160961 3983 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
Traf1P39428 Tcf7l2-210ENSMUST00000111657 4126 ntAPPRIS ALT2 TSL 5 BASIC8.25□□□□□ -1.09
Traf1P39428 Rfpl4-202ENSMUST00000179971 1445 ntAPPRIS P2 TSL 1 (best) BASIC8.25□□□□□ -1.09
Traf1P39428 Galnt15-202ENSMUST00000164208 3563 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
Traf1P39428 Vmn2r105-201ENSMUST00000167382 2583 ntAPPRIS P1 TSL 5 BASIC8.25□□□□□ -1.09
Retrieved 100 of 76,532 protein–RNA pairs in 58 ms