Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Ndufa4-204ENSMUST00000204714 452 ntAPPRIS P1 TSL 3 BASIC9.74□□□□□ -0.85
Usp40Q8BWR4 4933430N04Rik-202ENSMUST00000208031 1146 ntTSL 1 (best) BASIC9.74□□□□□ -0.85
Usp40Q8BWR4 Gm44840-201ENSMUST00000208983 1168 ntTSL 1 (best) BASIC9.74□□□□□ -0.85
Usp40Q8BWR4 Gm46379-201ENSMUST00000222551 265 ntBASIC9.74□□□□□ -0.85
Usp40Q8BWR4 CT025525.1-201ENSMUST00000226325 1054 ntBASIC9.74□□□□□ -0.85
Usp40Q8BWR4 Scimp-201ENSMUST00000074572 617 ntTSL 1 (best) BASIC9.74□□□□□ -0.85
Usp40Q8BWR4 AC140409.2-201ENSMUST00000216936 3079 ntTSL 5 BASIC9.74□□□□□ -0.85
Usp40Q8BWR4 Sbf2-201ENSMUST00000033058 7154 ntAPPRIS P2 TSL 5 BASIC9.74□□□□□ -0.85
Usp40Q8BWR4 Gm14002-201ENSMUST00000123574 2839 ntTSL 1 (best) BASIC9.74□□□□□ -0.85
Usp40Q8BWR4 Naalad2-201ENSMUST00000001826 2831 ntTSL 1 (best) BASIC9.74□□□□□ -0.85
Usp40Q8BWR4 Usp8-201ENSMUST00000028841 4145 ntAPPRIS P3 TSL 1 (best) BASIC9.74□□□□□ -0.85
Usp40Q8BWR4 Gm42711-201ENSMUST00000197060 2302 ntTSL 1 (best) BASIC9.74□□□□□ -0.85
Usp40Q8BWR4 CT009604.1-201ENSMUST00000223900 1328 ntBASIC9.74□□□□□ -0.85
Usp40Q8BWR4 Tmem232-201ENSMUST00000062161 2665 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
Usp40Q8BWR4 Ano4-210ENSMUST00000182790 4018 ntAPPRIS ALT1 TSL 5 BASIC9.74□□□□□ -0.85
Usp40Q8BWR4 Kel-201ENSMUST00000031899 2530 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
Usp40Q8BWR4 Mbnl2-202ENSMUST00000167459 4534 ntTSL 1 (best) BASIC9.74□□□□□ -0.85
Usp40Q8BWR4 AC136019.1-201ENSMUST00000226503 1412 ntBASIC9.73□□□□□ -0.85
Usp40Q8BWR4 Pfkfb3-206ENSMUST00000114846 4634 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
Usp40Q8BWR4 Zbed4-ps3-201ENSMUST00000187149 3244 ntBASIC9.73□□□□□ -0.85
Usp40Q8BWR4 Kcnj15-203ENSMUST00000113855 5128 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
Usp40Q8BWR4 Efl1-206ENSMUST00000207868 1537 ntTSL 3 BASIC9.73□□□□□ -0.85
Usp40Q8BWR4 Pi4ka-201ENSMUST00000036161 6431 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
Usp40Q8BWR4 Ncor1-205ENSMUST00000101067 7243 ntAPPRIS ALT2 TSL 5 BASIC9.73□□□□□ -0.85
Usp40Q8BWR4 Gm5157-201ENSMUST00000185914 1581 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
Usp40Q8BWR4 Prl8a2-202ENSMUST00000110363 922 ntAPPRIS ALT2 TSL 1 (best) BASIC9.73□□□□□ -0.85
Usp40Q8BWR4 Prkd3-203ENSMUST00000118991 1265 ntTSL 2 BASIC9.73□□□□□ -0.85
Usp40Q8BWR4 Gm14301-201ENSMUST00000120181 324 ntBASIC9.73□□□□□ -0.85
Usp40Q8BWR4 Gm15171-201ENSMUST00000122191 334 ntBASIC9.73□□□□□ -0.85
Usp40Q8BWR4 Gm12205-201ENSMUST00000133940 575 ntTSL 5 BASIC9.73□□□□□ -0.85
Usp40Q8BWR4 Prl8a2-201ENSMUST00000018403 939 ntAPPRIS P3 TSL 1 (best) BASIC9.73□□□□□ -0.85
Usp40Q8BWR4 Gm7452-201ENSMUST00000200764 788 ntBASIC9.73□□□□□ -0.85
Usp40Q8BWR4 Olfr726-202ENSMUST00000206834 1256 ntAPPRIS P1 TSL 3 BASIC9.73□□□□□ -0.85
Usp40Q8BWR4 Gm18944-201ENSMUST00000207672 643 ntBASIC9.73□□□□□ -0.85
Usp40Q8BWR4 4930598N05Rik-205ENSMUST00000208693 873 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
Usp40Q8BWR4 Lncbate1-201ENSMUST00000211953 812 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
Usp40Q8BWR4 Gm19212-201ENSMUST00000216642 862 ntBASIC9.73□□□□□ -0.85
Usp40Q8BWR4 AC131912.1-201ENSMUST00000217527 290 ntTSL 5 BASIC9.73□□□□□ -0.85
Usp40Q8BWR4 Defb15-201ENSMUST00000062586 345 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
Usp40Q8BWR4 Platr26-201ENSMUST00000079720 641 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
Usp40Q8BWR4 Mir106b-201ENSMUST00000083580 82 ntBASIC9.73□□□□□ -0.85
Usp40Q8BWR4 Mir296-201ENSMUST00000083587 79 ntBASIC9.73□□□□□ -0.85
Usp40Q8BWR4 Zfp947-201ENSMUST00000080249 2872 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
Usp40Q8BWR4 Pdzd2-201ENSMUST00000075317 10756 ntAPPRIS P1 TSL 5 BASIC9.73□□□□□ -0.85
Usp40Q8BWR4 Arnt-205ENSMUST00000107161 4260 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
Usp40Q8BWR4 Plch1-208ENSMUST00000160638 6271 ntAPPRIS ALT2 TSL 5 BASIC9.73□□□□□ -0.85
Usp40Q8BWR4 Gm19024-201ENSMUST00000194681 1319 ntBASIC9.73□□□□□ -0.85
Usp40Q8BWR4 Bbs12-202ENSMUST00000108121 2348 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
Usp40Q8BWR4 Gm15318-202ENSMUST00000146320 1661 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
Usp40Q8BWR4 Bdnf-207ENSMUST00000111047 4042 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
Usp40Q8BWR4 Olfr731-204ENSMUST00000214388 5438 ntAPPRIS P1 TSL 5 BASIC9.73□□□□□ -0.85
Usp40Q8BWR4 Gm13856-201ENSMUST00000126498 1742 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
Usp40Q8BWR4 Zfp14-202ENSMUST00000207072 2835 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
Usp40Q8BWR4 Dixdc1-201ENSMUST00000034566 5709 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
Usp40Q8BWR4 Kdm5d-207ENSMUST00000189069 2177 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
Usp40Q8BWR4 Gm44916-201ENSMUST00000208664 2194 ntBASIC9.73□□□□□ -0.85
Usp40Q8BWR4 Tmem236-201ENSMUST00000077517 3659 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
Usp40Q8BWR4 Tlr4-202ENSMUST00000107365 1866 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
Usp40Q8BWR4 Olfr686-202ENSMUST00000214147 2646 ntAPPRIS P1 TSL 5 BASIC9.72□□□□□ -0.85
Usp40Q8BWR4 Mre11a-202ENSMUST00000115632 5660 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
Usp40Q8BWR4 Mpv17l-203ENSMUST00000128757 3089 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
Usp40Q8BWR4 Gfpt1-204ENSMUST00000113658 6238 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
Usp40Q8BWR4 Nphp3-207ENSMUST00000194774 4722 ntAPPRIS ALT2 TSL 1 (best) BASIC9.72□□□□□ -0.85
Usp40Q8BWR4 Gm45753-201ENSMUST00000116473 2753 ntAPPRIS P1 TSL 2 BASIC9.72□□□□□ -0.85
Usp40Q8BWR4 Tbc1d24-205ENSMUST00000168378 4350 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
Usp40Q8BWR4 Trim66-203ENSMUST00000106741 4417 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
Usp40Q8BWR4 Stra6l-201ENSMUST00000030011 3606 ntAPPRIS P3 TSL 1 (best) BASIC9.72□□□□□ -0.85
Usp40Q8BWR4 9330136K24Rik-201ENSMUST00000180842 2478 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
Usp40Q8BWR4 Mptx2-201ENSMUST00000111224 794 ntAPPRIS P1 TSL 5 BASIC9.72□□□□□ -0.85
Usp40Q8BWR4 Gm13352-201ENSMUST00000117515 262 ntBASIC9.72□□□□□ -0.85
Usp40Q8BWR4 Gm12573-201ENSMUST00000118158 286 ntBASIC9.72□□□□□ -0.85
Usp40Q8BWR4 Gm38068-201ENSMUST00000192546 540 ntBASIC9.72□□□□□ -0.85
Usp40Q8BWR4 Ighv8-3-201ENSMUST00000194985 295 ntBASIC9.72□□□□□ -0.85
Usp40Q8BWR4 Gm37148-201ENSMUST00000195097 716 ntTSL 5 BASIC9.72□□□□□ -0.85
Usp40Q8BWR4 Gm42708-201ENSMUST00000196332 905 ntBASIC9.72□□□□□ -0.85
Usp40Q8BWR4 Gm34368-201ENSMUST00000209512 1111 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
Usp40Q8BWR4 Gm7351-201ENSMUST00000210745 580 ntBASIC9.72□□□□□ -0.85
Usp40Q8BWR4 Gm36278-201ENSMUST00000217030 918 ntTSL 5 BASIC9.72□□□□□ -0.85
Usp40Q8BWR4 Gm18955-201ENSMUST00000223173 649 ntBASIC9.72□□□□□ -0.85
Usp40Q8BWR4 Olfr1447-201ENSMUST00000071484 1113 ntAPPRIS P1 BASIC9.72□□□□□ -0.85
Usp40Q8BWR4 Olfr1386-201ENSMUST00000071905 1128 ntAPPRIS P1 BASIC9.72□□□□□ -0.85
Usp40Q8BWR4 Olfr1129-201ENSMUST00000081034 945 ntAPPRIS P1 BASIC9.72□□□□□ -0.85
Usp40Q8BWR4 Olfr1446-201ENSMUST00000081236 1044 ntAPPRIS P1 BASIC9.72□□□□□ -0.85
Usp40Q8BWR4 Acaca-201ENSMUST00000020843 9026 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
Usp40Q8BWR4 Gm43189-201ENSMUST00000196040 3069 ntBASIC9.72□□□□□ -0.85
Usp40Q8BWR4 Gm38173-201ENSMUST00000193126 2314 ntBASIC9.72□□□□□ -0.85
Usp40Q8BWR4 Gm20752-201ENSMUST00000197341 2833 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
Usp40Q8BWR4 Myof-211ENSMUST00000226068 6633 ntAPPRIS ALT2 BASIC9.72□□□□□ -0.85
Usp40Q8BWR4 Gm13749-201ENSMUST00000133244 1432 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
Usp40Q8BWR4 Pramel4-202ENSMUST00000091676 2399 ntAPPRIS P2 TSL 1 (best) BASIC9.72□□□□□ -0.85
Usp40Q8BWR4 Fer1l6-203ENSMUST00000161028 5714 ntAPPRIS P1 TSL 5 BASIC9.72□□□□□ -0.85
Usp40Q8BWR4 Gm37785-201ENSMUST00000195783 2408 ntBASIC9.72□□□□□ -0.85
Usp40Q8BWR4 Patl2-201ENSMUST00000028665 2434 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
Usp40Q8BWR4 Gm15813-201ENSMUST00000142286 2541 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
Usp40Q8BWR4 4933404O12Rik-202ENSMUST00000181190 4058 ntTSL 5 BASIC9.72□□□□□ -0.85
Usp40Q8BWR4 Pdilt-201ENSMUST00000033267 2146 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.85
Usp40Q8BWR4 C230057A21Rik-201ENSMUST00000194944 3331 ntBASIC9.71□□□□□ -0.85
Usp40Q8BWR4 Ptbp2-207ENSMUST00000197464 1742 ntTSL 1 (best) BASIC9.71□□□□□ -0.85
Usp40Q8BWR4 Olfr1312-204ENSMUST00000215531 2975 ntAPPRIS P1 TSL 5 BASIC9.71□□□□□ -0.85
Usp40Q8BWR4 Iglc2-201ENSMUST00000103749 606 ntAPPRIS ALT2 TSL 1 (best) BASIC9.71□□□□□ -0.86
Retrieved 100 of 76,532 protein–RNA pairs in 82.8 ms