Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Mapk10-202ENSMUST00000112846 2617 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
Cux1P53564 Rai14-207ENSMUST00000227506 4732 ntAPPRIS ALT2 BASIC10.84□□□□□ -0.67
Cux1P53564 B020004J07Rik-202ENSMUST00000106919 1976 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Cux1P53564 Igf1os-202ENSMUST00000146581 2595 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
Cux1P53564 Perm1-201ENSMUST00000105572 3901 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Cux1P53564 Gm13301-201ENSMUST00000121728 2446 ntBASIC10.84□□□□□ -0.67
Cux1P53564 Pogz-203ENSMUST00000107266 4100 ntAPPRIS ALT2 TSL 5 BASIC10.84□□□□□ -0.67
Cux1P53564 Zfp616-203ENSMUST00000116546 531 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
Cux1P53564 Gm12244-201ENSMUST00000119500 291 ntBASIC10.84□□□□□ -0.67
Cux1P53564 Gm25342-201ENSMUST00000157459 122 ntBASIC10.84□□□□□ -0.67
Cux1P53564 Gm17137-202ENSMUST00000165729 957 ntBASIC10.84□□□□□ -0.67
Cux1P53564 Gm18006-201ENSMUST00000177411 662 ntBASIC10.84□□□□□ -0.67
Cux1P53564 Gm27998-201ENSMUST00000184902 361 ntBASIC10.84□□□□□ -0.67
Cux1P53564 Gm28586-201ENSMUST00000189857 456 ntBASIC10.84□□□□□ -0.67
Cux1P53564 Gm37285-201ENSMUST00000194465 1139 ntBASIC10.84□□□□□ -0.67
Cux1P53564 Gm43089-201ENSMUST00000199162 275 ntBASIC10.84□□□□□ -0.67
Cux1P53564 AC157085.1-201ENSMUST00000216343 162 ntBASIC10.84□□□□□ -0.67
Cux1P53564 Rapgef5-206ENSMUST00000222185 5508 ntTSL 1 (best) BASIC10.84□□□□□ -0.67
Cux1P53564 AC134917.2-201ENSMUST00000223354 124 ntBASIC10.84□□□□□ -0.67
Cux1P53564 AC138329.1-201ENSMUST00000225040 471 ntBASIC10.84□□□□□ -0.67
Cux1P53564 Olfr399-201ENSMUST00000059440 1003 ntAPPRIS P1 BASIC10.84□□□□□ -0.67
Cux1P53564 1700026J12Rik-201ENSMUST00000098226 1127 ntTSL 5 BASIC10.84□□□□□ -0.67
Cux1P53564 Cdh3-201ENSMUST00000080797 4384 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Cux1P53564 Zwint-202ENSMUST00000105431 2676 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.67
Cux1P53564 Efl1-206ENSMUST00000207868 1537 ntTSL 3 BASIC10.83□□□□□ -0.67
Cux1P53564 Zfp944-201ENSMUST00000115535 2784 ntAPPRIS P1 TSL 5 BASIC10.83□□□□□ -0.68
Cux1P53564 Gm44669-201ENSMUST00000207774 1969 ntBASIC10.83□□□□□ -0.68
Cux1P53564 Olfr316-202ENSMUST00000215071 2719 ntAPPRIS P1 TSL 5 BASIC10.83□□□□□ -0.68
Cux1P53564 Gm10744-201ENSMUST00000220184 2706 ntBASIC10.83□□□□□ -0.68
Cux1P53564 Pcdh15-216ENSMUST00000131724 6322 ntAPPRIS ALT2 TSL 5 BASIC10.83□□□□□ -0.68
Cux1P53564 Atp1a4-201ENSMUST00000111243 3470 ntAPPRIS P1 TSL 5 BASIC10.83□□□□□ -0.68
Cux1P53564 Cenpl-201ENSMUST00000028035 4883 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
Cux1P53564 Fam198b-201ENSMUST00000029567 6627 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Cux1P53564 Gm43497-201ENSMUST00000201137 2316 ntBASIC10.83□□□□□ -0.68
Cux1P53564 CT025619.3-201ENSMUST00000216299 3267 ntBASIC10.83□□□□□ -0.68
Cux1P53564 Pum1-204ENSMUST00000105991 4614 ntTSL 1 (best) BASIC10.83□□□□□ -0.68
Cux1P53564 Trav19-201ENSMUST00000103674 446 ntAPPRIS P1 BASIC10.83□□□□□ -0.68
Cux1P53564 Gm24069-201ENSMUST00000104512 127 ntBASIC10.83□□□□□ -0.68
Cux1P53564 Gstm6-203ENSMUST00000106683 745 ntTSL 3 BASIC10.83□□□□□ -0.68
Cux1P53564 Gm14733-201ENSMUST00000117680 133 ntBASIC10.83□□□□□ -0.68
Cux1P53564 Gm14202-201ENSMUST00000120121 311 ntBASIC10.83□□□□□ -0.68
Cux1P53564 Gm11581-201ENSMUST00000122024 763 ntBASIC10.83□□□□□ -0.68
Cux1P53564 Gm23426-201ENSMUST00000122483 318 ntBASIC10.83□□□□□ -0.68
Cux1P53564 Trav7-1-201ENSMUST00000198019 337 ntAPPRIS P1 BASIC10.83□□□□□ -0.68
Cux1P53564 Olfr291-201ENSMUST00000211582 1159 ntAPPRIS P2 TSL 2 BASIC10.83□□□□□ -0.68
Cux1P53564 Gm32005-201ENSMUST00000212446 959 ntTSL 5 BASIC10.83□□□□□ -0.68
Cux1P53564 Gm8637-201ENSMUST00000212919 1085 ntBASIC10.83□□□□□ -0.68
Cux1P53564 AC153821.1-201ENSMUST00000217893 581 ntTSL 2 BASIC10.83□□□□□ -0.68
Cux1P53564 AC156790.1-201ENSMUST00000226572 559 ntBASIC10.83□□□□□ -0.68
Cux1P53564 5430427O19Rik-201ENSMUST00000113976 3754 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Cux1P53564 Serpina12-201ENSMUST00000043915 3690 ntAPPRIS P1 TSL 1 (best) BASIC10.83□□□□□ -0.68
Cux1P53564 AC123738.2-201ENSMUST00000223791 1899 ntBASIC10.82□□□□□ -0.68
Cux1P53564 Uspl1-203ENSMUST00000117878 2931 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Cux1P53564 4930402F06Rik-202ENSMUST00000113010 1372 ntAPPRIS P3 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cux1P53564 Cldn2-201ENSMUST00000054889 3044 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cux1P53564 Exoc5-207ENSMUST00000162175 12699 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cux1P53564 Phf6-201ENSMUST00000078944 4350 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cux1P53564 March1-201ENSMUST00000039540 2733 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Cux1P53564 Calcr-202ENSMUST00000115622 3721 ntAPPRIS ALT2 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cux1P53564 Gm10773-201ENSMUST00000218071 3935 ntBASIC10.82□□□□□ -0.68
Cux1P53564 Rab11b-201ENSMUST00000057373 6109 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cux1P53564 Greb1-201ENSMUST00000048064 7940 ntAPPRIS P3 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cux1P53564 Atr-201ENSMUST00000034980 8056 ntTSL 5 BASIC10.82□□□□□ -0.68
Cux1P53564 Sbf2-205ENSMUST00000164759 7090 ntAPPRIS ALT2 TSL 5 BASIC10.82□□□□□ -0.68
Cux1P53564 A330015K06Rik-201ENSMUST00000195489 4286 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Cux1P53564 Cast-202ENSMUST00000220738 1653 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Cux1P53564 Trav8d-1-201ENSMUST00000103580 400 ntAPPRIS P1 BASIC10.82□□□□□ -0.68
Cux1P53564 Pigp-201ENSMUST00000113905 758 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cux1P53564 Gm21719-201ENSMUST00000115940 693 ntAPPRIS P1 BASIC10.82□□□□□ -0.68
Cux1P53564 Ino80c-202ENSMUST00000125169 756 ntTSL 3 BASIC10.82□□□□□ -0.68
Cux1P53564 Gm12860-201ENSMUST00000148457 957 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Cux1P53564 1700042G15Rik-203ENSMUST00000152001 583 ntTSL 1 (best) BASIC10.82□□□□□ -0.68
Cux1P53564 Gm14343-201ENSMUST00000154524 731 ntTSL 3 BASIC10.82□□□□□ -0.68
Cux1P53564 Gm20454-201ENSMUST00000172713 221 ntBASIC10.82□□□□□ -0.68
Cux1P53564 Gm26557-201ENSMUST00000180756 493 ntBASIC10.82□□□□□ -0.68
Cux1P53564 Gm18430-201ENSMUST00000197534 682 ntBASIC10.82□□□□□ -0.68
Cux1P53564 Gm45899-201ENSMUST00000212196 1276 ntBASIC10.82□□□□□ -0.68
Cux1P53564 Gm33838-201ENSMUST00000214038 786 ntTSL 5 BASIC10.82□□□□□ -0.68
Cux1P53564 Gm21731-201ENSMUST00000079524 489 ntBASIC10.82□□□□□ -0.68
Cux1P53564 Mir135a-1-201ENSMUST00000083473 90 ntBASIC10.82□□□□□ -0.68
Cux1P53564 Parp11-201ENSMUST00000039680 3746 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cux1P53564 Gm14496-201ENSMUST00000071760 2550 ntAPPRIS P1 TSL 5 BASIC10.82□□□□□ -0.68
Cux1P53564 Tas1r3-201ENSMUST00000030949 3523 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cux1P53564 Rgr-201ENSMUST00000022338 4240 ntAPPRIS P1 TSL 1 (best) BASIC10.82□□□□□ -0.68
Cux1P53564 Gm15575-201ENSMUST00000119414 1581 ntBASIC10.82□□□□□ -0.68
Cux1P53564 Vmn1r181-202ENSMUST00000226843 4496 ntAPPRIS P1 BASIC10.81□□□□□ -0.68
Cux1P53564 AC153945.1-201ENSMUST00000217761 1722 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Cux1P53564 Ttc33-201ENSMUST00000022751 1832 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Cux1P53564 Zfp239-201ENSMUST00000079405 3158 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.68
Cux1P53564 AC154828.1-201ENSMUST00000220696 2810 ntBASIC10.81□□□□□ -0.68
Cux1P53564 Gm2986-201ENSMUST00000121603 382 ntBASIC10.81□□□□□ -0.68
Cux1P53564 Gm23430-201ENSMUST00000122490 314 ntBASIC10.81□□□□□ -0.68
Cux1P53564 Gm25117-201ENSMUST00000157194 144 ntBASIC10.81□□□□□ -0.68
Cux1P53564 Gm25219-201ENSMUST00000157545 330 ntBASIC10.81□□□□□ -0.68
Cux1P53564 Gm36935-201ENSMUST00000192526 292 ntBASIC10.81□□□□□ -0.68
Cux1P53564 4930563H07Rik-201ENSMUST00000203494 628 ntTSL 1 (best) BASIC10.81□□□□□ -0.68
Cux1P53564 Gm45589-201ENSMUST00000209366 895 ntTSL 3 BASIC10.81□□□□□ -0.68
Cux1P53564 Gm45693-201ENSMUST00000211391 1157 ntBASIC10.81□□□□□ -0.68
Cux1P53564 Gm45782-201ENSMUST00000212670 366 ntBASIC10.81□□□□□ -0.68
Cux1P53564 AC153793.1-201ENSMUST00000220956 1298 ntTSL 5 BASIC10.81□□□□□ -0.68
Retrieved 100 of 76,532 protein–RNA pairs in 100.7 ms