Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Trim54Q9ERP3 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
Trim54Q9ERP3 AI846148-201ENSMUST00000025924 3183 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
Trim54Q9ERP3 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
Trim54Q9ERP3 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
Trim54Q9ERP3 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.77
Trim54Q9ERP3 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Trim54Q9ERP3 H2-K2-201ENSMUST00000174250 1049 ntBASIC19.89■□□□□ 0.77
Trim54Q9ERP3 Ccnd3-218ENSMUST00000183177 2060 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
Trim54Q9ERP3 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC19.89■□□□□ 0.77
Trim54Q9ERP3 AL672049.1-201ENSMUST00000197943 91 ntBASIC19.89■□□□□ 0.77
Trim54Q9ERP3 Cln5-201ENSMUST00000022721 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Trim54Q9ERP3 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Trim54Q9ERP3 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Trim54Q9ERP3 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Trim54Q9ERP3 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Trim54Q9ERP3 Dcbld1-201ENSMUST00000069004 3024 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Trim54Q9ERP3 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Trim54Q9ERP3 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Trim54Q9ERP3 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Trim54Q9ERP3 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
Trim54Q9ERP3 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Trim54Q9ERP3 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Trim54Q9ERP3 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Trim54Q9ERP3 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Trim54Q9ERP3 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Trim54Q9ERP3 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
Trim54Q9ERP3 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Trim54Q9ERP3 Gm15378-201ENSMUST00000121894 207 ntBASIC19.88■□□□□ 0.77
Trim54Q9ERP3 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Trim54Q9ERP3 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Trim54Q9ERP3 AC153881.1-201ENSMUST00000214448 284 ntBASIC19.88■□□□□ 0.77
Trim54Q9ERP3 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC19.88■□□□□ 0.77
Trim54Q9ERP3 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC19.87■□□□□ 0.77
Trim54Q9ERP3 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
Trim54Q9ERP3 Bag5-201ENSMUST00000054636 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Trim54Q9ERP3 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Trim54Q9ERP3 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Trim54Q9ERP3 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Trim54Q9ERP3 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Trim54Q9ERP3 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Trim54Q9ERP3 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Trim54Q9ERP3 Gm1673-203ENSMUST00000114383 511 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Trim54Q9ERP3 Gm11927-201ENSMUST00000118472 759 ntBASIC19.87■□□□□ 0.77
Trim54Q9ERP3 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC19.87■□□□□ 0.77
Trim54Q9ERP3 AC107452.1-201ENSMUST00000227963 481 ntBASIC19.87■□□□□ 0.77
Trim54Q9ERP3 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Trim54Q9ERP3 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Trim54Q9ERP3 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Trim54Q9ERP3 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Trim54Q9ERP3 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Trim54Q9ERP3 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC19.86■□□□□ 0.77
Trim54Q9ERP3 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC19.86■□□□□ 0.77
Trim54Q9ERP3 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Trim54Q9ERP3 Dleu2-210ENSMUST00000183054 722 ntTSL 5 BASIC19.86■□□□□ 0.77
Trim54Q9ERP3 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Trim54Q9ERP3 AC158538.1-201ENSMUST00000225870 294 ntBASIC19.86■□□□□ 0.77
Trim54Q9ERP3 Wnt10b-205ENSMUST00000226846 1204 ntBASIC19.86■□□□□ 0.77
Trim54Q9ERP3 Prdx5-201ENSMUST00000025904 1262 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Trim54Q9ERP3 Stard3-201ENSMUST00000018311 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Trim54Q9ERP3 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Trim54Q9ERP3 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Trim54Q9ERP3 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
Trim54Q9ERP3 Flg-201ENSMUST00000050758 1488 ntBASIC19.86■□□□□ 0.77
Trim54Q9ERP3 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Trim54Q9ERP3 Gm8309-201ENSMUST00000206627 1448 ntBASIC19.85■□□□□ 0.77
Trim54Q9ERP3 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Trim54Q9ERP3 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Trim54Q9ERP3 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Trim54Q9ERP3 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Trim54Q9ERP3 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Trim54Q9ERP3 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Trim54Q9ERP3 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Trim54Q9ERP3 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Trim54Q9ERP3 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
Trim54Q9ERP3 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC19.85■□□□□ 0.77
Trim54Q9ERP3 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
Trim54Q9ERP3 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Trim54Q9ERP3 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Trim54Q9ERP3 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
Trim54Q9ERP3 Gm715-201ENSMUST00000117865 831 ntBASIC19.84■□□□□ 0.77
Trim54Q9ERP3 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Trim54Q9ERP3 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Trim54Q9ERP3 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Trim54Q9ERP3 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
Trim54Q9ERP3 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
Trim54Q9ERP3 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
Trim54Q9ERP3 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Trim54Q9ERP3 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC19.83■□□□□ 0.77
Trim54Q9ERP3 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC19.83■□□□□ 0.77
Trim54Q9ERP3 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Trim54Q9ERP3 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
Trim54Q9ERP3 AC124603.1-201ENSMUST00000223843 308 ntBASIC19.83■□□□□ 0.77
Trim54Q9ERP3 2510002D24Rik-201ENSMUST00000055413 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Trim54Q9ERP3 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.76
Trim54Q9ERP3 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.76
Trim54Q9ERP3 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC19.83■□□□□ 0.76
Trim54Q9ERP3 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Trim54Q9ERP3 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC19.83■□□□□ 0.76
Trim54Q9ERP3 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Retrieved 100 of 76,532 protein–RNA pairs in 30.6 ms