Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Cdc40Q9DC48 Ntmt1-201ENSMUST00000041830 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Cdc40Q9DC48 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Cdc40Q9DC48 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC17.04■□□□□ 0.32
Cdc40Q9DC48 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Cdc40Q9DC48 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Cdc40Q9DC48 Gm13534-201ENSMUST00000121169 513 ntBASIC17.04■□□□□ 0.32
Cdc40Q9DC48 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC17.04■□□□□ 0.32
Cdc40Q9DC48 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Cdc40Q9DC48 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC17.04■□□□□ 0.32
Cdc40Q9DC48 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Cdc40Q9DC48 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
Cdc40Q9DC48 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Cdc40Q9DC48 Akr1a1-201ENSMUST00000030455 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
Cdc40Q9DC48 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
Cdc40Q9DC48 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Cdc40Q9DC48 Caml-201ENSMUST00000021963 1382 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Cdc40Q9DC48 Gm10655-201ENSMUST00000098658 1397 ntBASIC17.03■□□□□ 0.32
Cdc40Q9DC48 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Cdc40Q9DC48 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Cdc40Q9DC48 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Cdc40Q9DC48 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Cdc40Q9DC48 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
Cdc40Q9DC48 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Cdc40Q9DC48 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
Cdc40Q9DC48 Gm13148-201ENSMUST00000118892 745 ntBASIC17.03■□□□□ 0.32
Cdc40Q9DC48 Gm10653-202ENSMUST00000139570 835 ntBASIC17.03■□□□□ 0.32
Cdc40Q9DC48 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Cdc40Q9DC48 Gm4968-201ENSMUST00000071458 858 ntBASIC17.03■□□□□ 0.32
Cdc40Q9DC48 Tcap-201ENSMUST00000008021 948 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Cdc40Q9DC48 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC17.03■□□□□ 0.32
Cdc40Q9DC48 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Cdc40Q9DC48 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
Cdc40Q9DC48 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
Cdc40Q9DC48 Mrpl3-205ENSMUST00000149243 2309 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
Cdc40Q9DC48 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC17.03■□□□□ 0.32
Cdc40Q9DC48 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Cdc40Q9DC48 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Cdc40Q9DC48 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Cdc40Q9DC48 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
Cdc40Q9DC48 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Cdc40Q9DC48 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC17.02■□□□□ 0.32
Cdc40Q9DC48 BC021767-201ENSMUST00000126387 1716 ntBASIC17.02■□□□□ 0.32
Cdc40Q9DC48 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Cdc40Q9DC48 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Cdc40Q9DC48 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Cdc40Q9DC48 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.32
Cdc40Q9DC48 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC17.02■□□□□ 0.32
Cdc40Q9DC48 Immp2l-203ENSMUST00000134965 977 ntAPPRIS P1 TSL 5 BASIC17.02■□□□□ 0.32
Cdc40Q9DC48 Tspan2os-201ENSMUST00000146624 590 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Cdc40Q9DC48 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC17.02■□□□□ 0.32
Cdc40Q9DC48 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
Cdc40Q9DC48 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Cdc40Q9DC48 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
Cdc40Q9DC48 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Cdc40Q9DC48 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
Cdc40Q9DC48 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Cdc40Q9DC48 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
Cdc40Q9DC48 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Cdc40Q9DC48 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Cdc40Q9DC48 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Cdc40Q9DC48 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC17.01■□□□□ 0.31
Cdc40Q9DC48 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC17.01■□□□□ 0.31
Cdc40Q9DC48 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Cdc40Q9DC48 Gm43859-201ENSMUST00000200075 1412 ntBASIC17.01■□□□□ 0.31
Cdc40Q9DC48 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
Cdc40Q9DC48 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
Cdc40Q9DC48 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
Cdc40Q9DC48 Plxnd1-201ENSMUST00000015511 6907 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Cdc40Q9DC48 Gm15645-201ENSMUST00000131504 2208 ntTSL 5 BASIC17■□□□□ 0.31
Cdc40Q9DC48 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Cdc40Q9DC48 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
Cdc40Q9DC48 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC17■□□□□ 0.31
Cdc40Q9DC48 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Cdc40Q9DC48 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Cdc40Q9DC48 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC17■□□□□ 0.31
Cdc40Q9DC48 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC17■□□□□ 0.31
Cdc40Q9DC48 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC17■□□□□ 0.31
Cdc40Q9DC48 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
Cdc40Q9DC48 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Cdc40Q9DC48 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC17■□□□□ 0.31
Cdc40Q9DC48 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Cdc40Q9DC48 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Cdc40Q9DC48 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Cdc40Q9DC48 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
Cdc40Q9DC48 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
Cdc40Q9DC48 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Cdc40Q9DC48 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Cdc40Q9DC48 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Cdc40Q9DC48 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Cdc40Q9DC48 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Cdc40Q9DC48 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Cdc40Q9DC48 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Cdc40Q9DC48 Gm6211-202ENSMUST00000167849 925 ntBASIC16.99■□□□□ 0.31
Cdc40Q9DC48 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC16.99■□□□□ 0.31
Cdc40Q9DC48 Ttc32-201ENSMUST00000085741 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Cdc40Q9DC48 Gm5784-201ENSMUST00000179344 2478 ntBASIC16.99■□□□□ 0.31
Cdc40Q9DC48 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
Cdc40Q9DC48 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
Cdc40Q9DC48 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC16.99■□□□□ 0.31
Retrieved 100 of 76,532 protein–RNA pairs in 26.5 ms