Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC26.1■■□□□ 1.77
Usp47Q8BY87 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
Usp47Q8BY87 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC26.09■■□□□ 1.77
Usp47Q8BY87 Ern1-203ENSMUST00000106800 654 ntTSL 3 BASIC26.09■■□□□ 1.77
Usp47Q8BY87 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC26.09■■□□□ 1.77
Usp47Q8BY87 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
Usp47Q8BY87 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC26.09■■□□□ 1.77
Usp47Q8BY87 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
Usp47Q8BY87 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC26.09■■□□□ 1.77
Usp47Q8BY87 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
Usp47Q8BY87 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
Usp47Q8BY87 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC26.09■■□□□ 1.77
Usp47Q8BY87 Gm42922-201ENSMUST00000195887 2078 ntBASIC26.09■■□□□ 1.77
Usp47Q8BY87 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
Usp47Q8BY87 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
Usp47Q8BY87 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
Usp47Q8BY87 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
Usp47Q8BY87 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC26.08■■□□□ 1.77
Usp47Q8BY87 Zfp783-201ENSMUST00000095946 670 ntBASIC26.08■■□□□ 1.77
Usp47Q8BY87 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
Usp47Q8BY87 Bmp8a-202ENSMUST00000102641 1917 ntAPPRIS P3 TSL 1 (best) BASIC26.08■■□□□ 1.77
Usp47Q8BY87 Ccdc177-201ENSMUST00000073251 5775 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
Usp47Q8BY87 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
Usp47Q8BY87 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC26.08■■□□□ 1.77
Usp47Q8BY87 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC26.08■■□□□ 1.77
Usp47Q8BY87 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
Usp47Q8BY87 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC26.08■■□□□ 1.77
Usp47Q8BY87 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC26.08■■□□□ 1.77
Usp47Q8BY87 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
Usp47Q8BY87 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC26.07■■□□□ 1.76
Usp47Q8BY87 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
Usp47Q8BY87 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
Usp47Q8BY87 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC26.07■■□□□ 1.76
Usp47Q8BY87 Alkbh1-212ENSMUST00000185301 408 ntBASIC26.07■■□□□ 1.76
Usp47Q8BY87 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
Usp47Q8BY87 Fstl3-201ENSMUST00000020575 1955 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
Usp47Q8BY87 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC26.06■■□□□ 1.76
Usp47Q8BY87 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC26.06■■□□□ 1.76
Usp47Q8BY87 Lrg1-201ENSMUST00000041357 1351 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
Usp47Q8BY87 Rbm43-201ENSMUST00000102767 2057 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
Usp47Q8BY87 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
Usp47Q8BY87 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC26.06■■□□□ 1.76
Usp47Q8BY87 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC26.06■■□□□ 1.76
Usp47Q8BY87 Stard3-201ENSMUST00000018311 2070 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
Usp47Q8BY87 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC26.06■■□□□ 1.76
Usp47Q8BY87 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC26.05■■□□□ 1.76
Usp47Q8BY87 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
Usp47Q8BY87 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
Usp47Q8BY87 Gm9194-201ENSMUST00000220749 1447 ntBASIC26.05■■□□□ 1.76
Usp47Q8BY87 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC26.05■■□□□ 1.76
Usp47Q8BY87 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
Usp47Q8BY87 Gm10616-201ENSMUST00000205285 2127 ntBASIC26.05■■□□□ 1.76
Usp47Q8BY87 Gm38308-201ENSMUST00000194934 1809 ntBASIC26.05■■□□□ 1.76
Usp47Q8BY87 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
Usp47Q8BY87 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC26.05■■□□□ 1.76
Usp47Q8BY87 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC26.04■■□□□ 1.76
Usp47Q8BY87 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
Usp47Q8BY87 Gm44544-201ENSMUST00000207052 1844 ntBASIC26.04■■□□□ 1.76
Usp47Q8BY87 Gm38342-201ENSMUST00000195710 2980 ntBASIC26.04■■□□□ 1.76
Usp47Q8BY87 Snx5-202ENSMUST00000110030 2512 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
Usp47Q8BY87 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC26.04■■□□□ 1.76
Usp47Q8BY87 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
Usp47Q8BY87 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC26.04■■□□□ 1.76
Usp47Q8BY87 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
Usp47Q8BY87 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
Usp47Q8BY87 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
Usp47Q8BY87 Mark2-206ENSMUST00000164205 3104 ntAPPRIS ALT2 TSL 1 (best) BASIC26.03■■□□□ 1.76
Usp47Q8BY87 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
Usp47Q8BY87 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC26.03■■□□□ 1.76
Usp47Q8BY87 Gm10698-201ENSMUST00000182663 604 ntBASIC26.03■■□□□ 1.76
Usp47Q8BY87 Gm38285-201ENSMUST00000192928 922 ntBASIC26.03■■□□□ 1.76
Usp47Q8BY87 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
Usp47Q8BY87 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
Usp47Q8BY87 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
Usp47Q8BY87 Gm13158-201ENSMUST00000122007 736 ntBASIC26.02■■□□□ 1.76
Usp47Q8BY87 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
Usp47Q8BY87 Mtag2-201ENSMUST00000058665 714 ntBASIC26.02■■□□□ 1.76
Usp47Q8BY87 Man1a-203ENSMUST00000105470 2847 ntAPPRIS P1 TSL 5 BASIC26.02■■□□□ 1.76
Usp47Q8BY87 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC26.02■■□□□ 1.76
Usp47Q8BY87 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC26.02■■□□□ 1.76
Usp47Q8BY87 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.76
Usp47Q8BY87 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
Usp47Q8BY87 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
Usp47Q8BY87 Rpl36al-202ENSMUST00000110619 1276 ntAPPRIS P1 BASIC26.01■■□□□ 1.75
Usp47Q8BY87 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC26.01■■□□□ 1.75
Usp47Q8BY87 Gm43213-201ENSMUST00000151866 1790 ntBASIC26.01■■□□□ 1.75
Usp47Q8BY87 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC26.01■■□□□ 1.75
Usp47Q8BY87 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC26.01■■□□□ 1.75
Usp47Q8BY87 Gm18666-201ENSMUST00000190039 958 ntBASIC26.01■■□□□ 1.75
Usp47Q8BY87 AC121961.1-201ENSMUST00000218594 1779 ntBASIC26.01■■□□□ 1.75
Usp47Q8BY87 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC26.01■■□□□ 1.75
Usp47Q8BY87 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
Usp47Q8BY87 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
Usp47Q8BY87 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
Usp47Q8BY87 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
Usp47Q8BY87 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
Usp47Q8BY87 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
Usp47Q8BY87 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
Usp47Q8BY87 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC26■■□□□ 1.75
Usp47Q8BY87 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC26■■□□□ 1.75
Retrieved 100 of 76,532 protein–RNA pairs in 20.6 ms