Protein–RNA interactions for Protein: Q6PGB8

Smarca1, Probable global transcription activator SNF2L1, mousemouse

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarca1Q6PGB8 Rarb-207ENSMUST00000225921 2756 ntBASIC20.48■□□□□ 0.87
Smarca1Q6PGB8 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Smarca1Q6PGB8 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Smarca1Q6PGB8 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Smarca1Q6PGB8 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC20.48■□□□□ 0.87
Smarca1Q6PGB8 Gm4968-201ENSMUST00000071458 858 ntBASIC20.48■□□□□ 0.87
Smarca1Q6PGB8 Dstn-201ENSMUST00000103172 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Smarca1Q6PGB8 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
Smarca1Q6PGB8 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
Smarca1Q6PGB8 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Smarca1Q6PGB8 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Smarca1Q6PGB8 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC20.47■□□□□ 0.87
Smarca1Q6PGB8 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC20.47■□□□□ 0.87
Smarca1Q6PGB8 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Smarca1Q6PGB8 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Smarca1Q6PGB8 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Smarca1Q6PGB8 Naa50-202ENSMUST00000063542 2136 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Smarca1Q6PGB8 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Smarca1Q6PGB8 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Smarca1Q6PGB8 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Smarca1Q6PGB8 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Smarca1Q6PGB8 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Smarca1Q6PGB8 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Smarca1Q6PGB8 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
Smarca1Q6PGB8 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Smarca1Q6PGB8 Rps2-ps11-201ENSMUST00000195283 868 ntBASIC20.46■□□□□ 0.87
Smarca1Q6PGB8 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
Smarca1Q6PGB8 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC20.46■□□□□ 0.87
Smarca1Q6PGB8 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Smarca1Q6PGB8 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Smarca1Q6PGB8 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
Smarca1Q6PGB8 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
Smarca1Q6PGB8 Depdc7-201ENSMUST00000028595 1801 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Smarca1Q6PGB8 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Smarca1Q6PGB8 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Smarca1Q6PGB8 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Smarca1Q6PGB8 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Smarca1Q6PGB8 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Smarca1Q6PGB8 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC20.45■□□□□ 0.86
Smarca1Q6PGB8 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Smarca1Q6PGB8 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC20.45■□□□□ 0.86
Smarca1Q6PGB8 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC20.45■□□□□ 0.86
Smarca1Q6PGB8 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC20.45■□□□□ 0.86
Smarca1Q6PGB8 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC20.45■□□□□ 0.86
Smarca1Q6PGB8 Sap30-201ENSMUST00000034022 1178 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Smarca1Q6PGB8 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Smarca1Q6PGB8 Angptl6-201ENSMUST00000043726 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Smarca1Q6PGB8 Gsto2-201ENSMUST00000056159 1351 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Smarca1Q6PGB8 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Smarca1Q6PGB8 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Smarca1Q6PGB8 AC123834.2-201ENSMUST00000224038 2340 ntBASIC20.44■□□□□ 0.86
Smarca1Q6PGB8 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
Smarca1Q6PGB8 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Smarca1Q6PGB8 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Smarca1Q6PGB8 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Smarca1Q6PGB8 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Smarca1Q6PGB8 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Smarca1Q6PGB8 Gm12669-201ENSMUST00000122162 1009 ntBASIC20.44■□□□□ 0.86
Smarca1Q6PGB8 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
Smarca1Q6PGB8 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
Smarca1Q6PGB8 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Smarca1Q6PGB8 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Smarca1Q6PGB8 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Smarca1Q6PGB8 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Smarca1Q6PGB8 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Smarca1Q6PGB8 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC20.43■□□□□ 0.86
Smarca1Q6PGB8 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Smarca1Q6PGB8 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Smarca1Q6PGB8 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Smarca1Q6PGB8 Klhdc4-205ENSMUST00000174192 1584 ntTSL 5 BASIC20.43■□□□□ 0.86
Smarca1Q6PGB8 Gm42922-201ENSMUST00000195887 2078 ntBASIC20.43■□□□□ 0.86
Smarca1Q6PGB8 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Smarca1Q6PGB8 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Smarca1Q6PGB8 Immp2l-203ENSMUST00000134965 977 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
Smarca1Q6PGB8 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Smarca1Q6PGB8 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Smarca1Q6PGB8 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Smarca1Q6PGB8 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Smarca1Q6PGB8 Gm43182-201ENSMUST00000199476 2528 ntBASIC20.42■□□□□ 0.86
Smarca1Q6PGB8 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
Smarca1Q6PGB8 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
Smarca1Q6PGB8 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC20.42■□□□□ 0.86
Smarca1Q6PGB8 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Smarca1Q6PGB8 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Smarca1Q6PGB8 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Smarca1Q6PGB8 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC20.42■□□□□ 0.86
Smarca1Q6PGB8 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Smarca1Q6PGB8 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Smarca1Q6PGB8 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Smarca1Q6PGB8 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC20.41■□□□□ 0.86
Smarca1Q6PGB8 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Smarca1Q6PGB8 F8a-201ENSMUST00000105111 2505 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
Smarca1Q6PGB8 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC20.41■□□□□ 0.86
Smarca1Q6PGB8 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC20.41■□□□□ 0.86
Smarca1Q6PGB8 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Smarca1Q6PGB8 Ttc32-201ENSMUST00000085741 1000 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Smarca1Q6PGB8 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Smarca1Q6PGB8 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Smarca1Q6PGB8 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Smarca1Q6PGB8 Caml-201ENSMUST00000021963 1382 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 18 ms