Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Hmgb4Q6P8W9 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Hmgb4Q6P8W9 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
Hmgb4Q6P8W9 Gm38342-201ENSMUST00000195710 2980 ntBASIC19.2■□□□□ 0.66
Hmgb4Q6P8W9 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Hmgb4Q6P8W9 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC19.19■□□□□ 0.66
Hmgb4Q6P8W9 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Hmgb4Q6P8W9 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Hmgb4Q6P8W9 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Hmgb4Q6P8W9 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Hmgb4Q6P8W9 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Hmgb4Q6P8W9 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Hmgb4Q6P8W9 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Hmgb4Q6P8W9 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC19.19■□□□□ 0.66
Hmgb4Q6P8W9 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC19.19■□□□□ 0.66
Hmgb4Q6P8W9 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Hmgb4Q6P8W9 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Hmgb4Q6P8W9 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC19.19■□□□□ 0.66
Hmgb4Q6P8W9 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC19.19■□□□□ 0.66
Hmgb4Q6P8W9 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Hmgb4Q6P8W9 Rpl38-202ENSMUST00000082092 345 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
Hmgb4Q6P8W9 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Hmgb4Q6P8W9 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Hmgb4Q6P8W9 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Hmgb4Q6P8W9 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Hmgb4Q6P8W9 Nol7-201ENSMUST00000071926 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Hmgb4Q6P8W9 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Hmgb4Q6P8W9 Tmod1-201ENSMUST00000107773 3158 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Hmgb4Q6P8W9 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Hmgb4Q6P8W9 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC19.18■□□□□ 0.66
Hmgb4Q6P8W9 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Hmgb4Q6P8W9 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
Hmgb4Q6P8W9 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Hmgb4Q6P8W9 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Hmgb4Q6P8W9 Dbndd1-202ENSMUST00000176286 1344 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Hmgb4Q6P8W9 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Hmgb4Q6P8W9 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Hmgb4Q6P8W9 Syt7-203ENSMUST00000169121 6834 ntTSL 5 BASIC19.18■□□□□ 0.66
Hmgb4Q6P8W9 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC19.18■□□□□ 0.66
Hmgb4Q6P8W9 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Hmgb4Q6P8W9 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Hmgb4Q6P8W9 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Hmgb4Q6P8W9 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Hmgb4Q6P8W9 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC19.17■□□□□ 0.66
Hmgb4Q6P8W9 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Hmgb4Q6P8W9 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Hmgb4Q6P8W9 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC19.17■□□□□ 0.66
Hmgb4Q6P8W9 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC19.17■□□□□ 0.66
Hmgb4Q6P8W9 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC19.17■□□□□ 0.66
Hmgb4Q6P8W9 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Hmgb4Q6P8W9 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Hmgb4Q6P8W9 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Hmgb4Q6P8W9 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC19.16■□□□□ 0.66
Hmgb4Q6P8W9 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Hmgb4Q6P8W9 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Hmgb4Q6P8W9 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
Hmgb4Q6P8W9 Gm2559-201ENSMUST00000201323 363 ntBASIC19.16■□□□□ 0.66
Hmgb4Q6P8W9 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Hmgb4Q6P8W9 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Hmgb4Q6P8W9 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Hmgb4Q6P8W9 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Hmgb4Q6P8W9 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Hmgb4Q6P8W9 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Hmgb4Q6P8W9 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Hmgb4Q6P8W9 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Hmgb4Q6P8W9 AC126028.2-201ENSMUST00000228100 1833 ntBASIC19.16■□□□□ 0.66
Hmgb4Q6P8W9 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.66
Hmgb4Q6P8W9 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Hmgb4Q6P8W9 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Hmgb4Q6P8W9 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Hmgb4Q6P8W9 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Hmgb4Q6P8W9 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Hmgb4Q6P8W9 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
Hmgb4Q6P8W9 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Hmgb4Q6P8W9 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
Hmgb4Q6P8W9 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC19.15■□□□□ 0.66
Hmgb4Q6P8W9 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Hmgb4Q6P8W9 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Hmgb4Q6P8W9 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Hmgb4Q6P8W9 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Hmgb4Q6P8W9 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Hmgb4Q6P8W9 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Hmgb4Q6P8W9 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Hmgb4Q6P8W9 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
Hmgb4Q6P8W9 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Hmgb4Q6P8W9 Gm13181-201ENSMUST00000120117 1069 ntBASIC19.14■□□□□ 0.65
Hmgb4Q6P8W9 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
Hmgb4Q6P8W9 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Hmgb4Q6P8W9 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC19.14■□□□□ 0.65
Hmgb4Q6P8W9 4930412O13Rik-201ENSMUST00000026889 1187 ntAPPRIS P5 TSL 1 (best) BASIC19.14■□□□□ 0.65
Hmgb4Q6P8W9 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC19.14■□□□□ 0.65
Hmgb4Q6P8W9 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
Hmgb4Q6P8W9 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
Hmgb4Q6P8W9 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Hmgb4Q6P8W9 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC19.14■□□□□ 0.65
Hmgb4Q6P8W9 Galnt16-204ENSMUST00000218943 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Hmgb4Q6P8W9 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Hmgb4Q6P8W9 Mir7071-201ENSMUST00000184847 69 ntBASIC19.13■□□□□ 0.65
Hmgb4Q6P8W9 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Hmgb4Q6P8W9 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 30.5 ms