Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC21.62■■□□□ 1.05
Limch1Q3UH68 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC21.62■■□□□ 1.05
Limch1Q3UH68 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC21.62■■□□□ 1.05
Limch1Q3UH68 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
Limch1Q3UH68 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Limch1Q3UH68 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Limch1Q3UH68 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
Limch1Q3UH68 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC21.62■■□□□ 1.05
Limch1Q3UH68 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
Limch1Q3UH68 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Limch1Q3UH68 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Limch1Q3UH68 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Limch1Q3UH68 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Limch1Q3UH68 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC21.61■■□□□ 1.05
Limch1Q3UH68 Gm19094-201ENSMUST00000209791 1246 ntBASIC21.61■■□□□ 1.05
Limch1Q3UH68 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Limch1Q3UH68 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Limch1Q3UH68 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
Limch1Q3UH68 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC21.61■■□□□ 1.05
Limch1Q3UH68 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Limch1Q3UH68 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Limch1Q3UH68 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC21.61■■□□□ 1.05
Limch1Q3UH68 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
Limch1Q3UH68 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC21.6■■□□□ 1.05
Limch1Q3UH68 Prmt3-201ENSMUST00000032715 2507 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Limch1Q3UH68 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
Limch1Q3UH68 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Limch1Q3UH68 Gm7290-201ENSMUST00000104990 617 ntBASIC21.6■■□□□ 1.05
Limch1Q3UH68 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC21.6■■□□□ 1.05
Limch1Q3UH68 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC21.6■■□□□ 1.05
Limch1Q3UH68 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
Limch1Q3UH68 Gm12918-201ENSMUST00000120234 636 ntBASIC21.6■■□□□ 1.05
Limch1Q3UH68 Gm15710-201ENSMUST00000121821 636 ntBASIC21.6■■□□□ 1.05
Limch1Q3UH68 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC21.6■■□□□ 1.05
Limch1Q3UH68 Gm5075-201ENSMUST00000196916 622 ntBASIC21.6■■□□□ 1.05
Limch1Q3UH68 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Limch1Q3UH68 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC21.6■■□□□ 1.05
Limch1Q3UH68 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC21.6■■□□□ 1.05
Limch1Q3UH68 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC21.6■■□□□ 1.05
Limch1Q3UH68 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Limch1Q3UH68 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Limch1Q3UH68 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Limch1Q3UH68 Gm13148-201ENSMUST00000118892 745 ntBASIC21.59■■□□□ 1.05
Limch1Q3UH68 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC21.59■■□□□ 1.05
Limch1Q3UH68 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
Limch1Q3UH68 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Limch1Q3UH68 Gm26634-201ENSMUST00000181146 1511 ntTSL 5 BASIC21.59■■□□□ 1.05
Limch1Q3UH68 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
Limch1Q3UH68 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Limch1Q3UH68 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
Limch1Q3UH68 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
Limch1Q3UH68 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
Limch1Q3UH68 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Limch1Q3UH68 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC21.59■■□□□ 1.05
Limch1Q3UH68 Gm10167-201ENSMUST00000150411 1479 ntBASIC21.58■■□□□ 1.05
Limch1Q3UH68 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Limch1Q3UH68 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Limch1Q3UH68 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
Limch1Q3UH68 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC21.58■■□□□ 1.05
Limch1Q3UH68 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Limch1Q3UH68 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.05
Limch1Q3UH68 Gm13534-201ENSMUST00000121169 513 ntBASIC21.58■■□□□ 1.05
Limch1Q3UH68 Gm6365-201ENSMUST00000054711 744 ntBASIC21.58■■□□□ 1.05
Limch1Q3UH68 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
Limch1Q3UH68 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.04
Limch1Q3UH68 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC21.58■■□□□ 1.04
Limch1Q3UH68 Dmtn-210ENSMUST00000228824 2377 ntBASIC21.58■■□□□ 1.04
Limch1Q3UH68 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC21.57■■□□□ 1.04
Limch1Q3UH68 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Limch1Q3UH68 Slc16a10-202ENSMUST00000213488 2325 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Limch1Q3UH68 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Limch1Q3UH68 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Limch1Q3UH68 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Limch1Q3UH68 Gm20760-201ENSMUST00000179197 648 ntBASIC21.57■■□□□ 1.04
Limch1Q3UH68 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC21.57■■□□□ 1.04
Limch1Q3UH68 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC21.57■■□□□ 1.04
Limch1Q3UH68 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC21.57■■□□□ 1.04
Limch1Q3UH68 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Limch1Q3UH68 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC21.56■■□□□ 1.04
Limch1Q3UH68 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Limch1Q3UH68 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
Limch1Q3UH68 Gm12527-201ENSMUST00000117967 564 ntBASIC21.56■■□□□ 1.04
Limch1Q3UH68 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Limch1Q3UH68 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Limch1Q3UH68 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Limch1Q3UH68 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
Limch1Q3UH68 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
Limch1Q3UH68 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Limch1Q3UH68 Gm45906-201ENSMUST00000208911 1430 ntBASIC21.55■■□□□ 1.04
Limch1Q3UH68 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Limch1Q3UH68 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Limch1Q3UH68 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Limch1Q3UH68 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
Limch1Q3UH68 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC21.55■■□□□ 1.04
Limch1Q3UH68 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC21.55■■□□□ 1.04
Limch1Q3UH68 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Limch1Q3UH68 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
Limch1Q3UH68 Gsto2-201ENSMUST00000056159 1351 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Limch1Q3UH68 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Limch1Q3UH68 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Retrieved 100 of 76,532 protein–RNA pairs in 34.9 ms