Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC23.53■■□□□ 1.36
Ddb1Q3U1J4 Gtf3a-204ENSMUST00000146511 1298 ntAPPRIS P5 TSL 1 (best) BASIC23.53■■□□□ 1.36
Ddb1Q3U1J4 Ank2-226ENSMUST00000189368 339 ntBASIC23.53■■□□□ 1.36
Ddb1Q3U1J4 Piga-208ENSMUST00000208697 947 ntTSL 5 BASIC23.53■■□□□ 1.36
Ddb1Q3U1J4 Spsb2-202ENSMUST00000052727 1219 ntAPPRIS P1 TSL 3 BASIC23.53■■□□□ 1.36
Ddb1Q3U1J4 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC23.52■■□□□ 1.36
Ddb1Q3U1J4 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC23.52■■□□□ 1.36
Ddb1Q3U1J4 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC23.52■■□□□ 1.36
Ddb1Q3U1J4 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
Ddb1Q3U1J4 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC23.52■■□□□ 1.36
Ddb1Q3U1J4 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
Ddb1Q3U1J4 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC23.52■■□□□ 1.36
Ddb1Q3U1J4 Fbxo9-203ENSMUST00000159099 1201 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
Ddb1Q3U1J4 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC23.52■■□□□ 1.36
Ddb1Q3U1J4 Slc35g2-201ENSMUST00000093792 1590 ntAPPRIS P1 TSL 2 BASIC23.52■■□□□ 1.36
Ddb1Q3U1J4 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
Ddb1Q3U1J4 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC23.51■■□□□ 1.35
Ddb1Q3U1J4 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC23.51■■□□□ 1.35
Ddb1Q3U1J4 Mycbp-202ENSMUST00000106202 1536 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
Ddb1Q3U1J4 Spint2-202ENSMUST00000108236 1211 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
Ddb1Q3U1J4 Gm14859-201ENSMUST00000117752 357 ntBASIC23.51■■□□□ 1.35
Ddb1Q3U1J4 Gm12781-201ENSMUST00000146269 395 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
Ddb1Q3U1J4 Rps2-ps2-201ENSMUST00000194305 881 ntBASIC23.51■■□□□ 1.35
Ddb1Q3U1J4 Gm42738-201ENSMUST00000201813 439 ntTSL 3 BASIC23.51■■□□□ 1.35
Ddb1Q3U1J4 Ntpcr-201ENSMUST00000034313 1155 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Ddb1Q3U1J4 Hebp1-201ENSMUST00000045855 1058 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Ddb1Q3U1J4 C030014I23Rik-201ENSMUST00000080911 1810 ntBASIC23.51■■□□□ 1.35
Ddb1Q3U1J4 Pink1-201ENSMUST00000030536 2375 ntAPPRIS P2 TSL 1 (best) BASIC23.51■■□□□ 1.35
Ddb1Q3U1J4 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
Ddb1Q3U1J4 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC23.51■■□□□ 1.35
Ddb1Q3U1J4 Phf14-203ENSMUST00000115511 3336 ntAPPRIS P1 TSL 5 BASIC23.5■■□□□ 1.35
Ddb1Q3U1J4 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
Ddb1Q3U1J4 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
Ddb1Q3U1J4 Gm14464-201ENSMUST00000119658 1254 ntBASIC23.5■■□□□ 1.35
Ddb1Q3U1J4 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC23.5■■□□□ 1.35
Ddb1Q3U1J4 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
Ddb1Q3U1J4 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC23.5■■□□□ 1.35
Ddb1Q3U1J4 Gm27463-201ENSMUST00000183569 57 ntBASIC23.5■■□□□ 1.35
Ddb1Q3U1J4 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
Ddb1Q3U1J4 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC23.49■■□□□ 1.35
Ddb1Q3U1J4 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC23.49■■□□□ 1.35
Ddb1Q3U1J4 Lce1j-201ENSMUST00000107304 420 ntAPPRIS P1 BASIC23.49■■□□□ 1.35
Ddb1Q3U1J4 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC23.49■■□□□ 1.35
Ddb1Q3U1J4 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC23.49■■□□□ 1.35
Ddb1Q3U1J4 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC23.48■■□□□ 1.35
Ddb1Q3U1J4 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC23.48■■□□□ 1.35
Ddb1Q3U1J4 Dapk1-202ENSMUST00000077453 5491 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
Ddb1Q3U1J4 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
Ddb1Q3U1J4 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
Ddb1Q3U1J4 Grcc10-201ENSMUST00000004389 863 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
Ddb1Q3U1J4 Prok1-201ENSMUST00000049852 813 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
Ddb1Q3U1J4 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
Ddb1Q3U1J4 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC23.47■■□□□ 1.35
Ddb1Q3U1J4 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC23.47■■□□□ 1.35
Ddb1Q3U1J4 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC23.47■■□□□ 1.35
Ddb1Q3U1J4 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC23.47■■□□□ 1.35
Ddb1Q3U1J4 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC23.47■■□□□ 1.35
Ddb1Q3U1J4 Mir5130-201ENSMUST00000175160 84 ntBASIC23.47■■□□□ 1.35
Ddb1Q3U1J4 D230030E09Rik-201ENSMUST00000222459 884 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
Ddb1Q3U1J4 AC159205.3-201ENSMUST00000224614 874 ntBASIC23.47■■□□□ 1.35
Ddb1Q3U1J4 Olfr279-201ENSMUST00000050451 933 ntAPPRIS P1 BASIC23.47■■□□□ 1.35
Ddb1Q3U1J4 Gsg1-201ENSMUST00000087729 1307 ntAPPRIS P4 TSL 1 (best) BASIC23.47■■□□□ 1.35
Ddb1Q3U1J4 Lsp1-204ENSMUST00000105967 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC23.47■■□□□ 1.35
Ddb1Q3U1J4 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
Ddb1Q3U1J4 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC23.46■■□□□ 1.35
Ddb1Q3U1J4 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC23.46■■□□□ 1.35
Ddb1Q3U1J4 Mzt2-202ENSMUST00000117136 758 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
Ddb1Q3U1J4 5430402O13Rik-201ENSMUST00000126537 869 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
Ddb1Q3U1J4 9130019P16Rik-201ENSMUST00000135612 1019 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
Ddb1Q3U1J4 Hsbp1-202ENSMUST00000212468 638 ntAPPRIS P1 TSL 2 BASIC23.46■■□□□ 1.35
Ddb1Q3U1J4 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC23.46■■□□□ 1.35
Ddb1Q3U1J4 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC23.46■■□□□ 1.35
Ddb1Q3U1J4 2310039H08Rik-201ENSMUST00000071430 773 ntAPPRIS P1 BASIC23.46■■□□□ 1.35
Ddb1Q3U1J4 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
Ddb1Q3U1J4 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC23.45■■□□□ 1.35
Ddb1Q3U1J4 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
Ddb1Q3U1J4 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC23.45■■□□□ 1.34
Ddb1Q3U1J4 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC23.45■■□□□ 1.34
Ddb1Q3U1J4 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC23.45■■□□□ 1.34
Ddb1Q3U1J4 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC23.45■■□□□ 1.34
Ddb1Q3U1J4 Hist1h2bj-201ENSMUST00000110452 463 ntAPPRIS P1 BASIC23.45■■□□□ 1.34
Ddb1Q3U1J4 Hist1h2bp-202ENSMUST00000110473 621 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
Ddb1Q3U1J4 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
Ddb1Q3U1J4 Arpc4-204ENSMUST00000204802 794 ntTSL 3 BASIC23.45■■□□□ 1.34
Ddb1Q3U1J4 Fuz-206ENSMUST00000207485 1140 ntAPPRIS ALT1 TSL 5 BASIC23.45■■□□□ 1.34
Ddb1Q3U1J4 Hist1h2bm-201ENSMUST00000224651 524 ntAPPRIS P1 BASIC23.45■■□□□ 1.34
Ddb1Q3U1J4 Nkx2-6-201ENSMUST00000062437 1134 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
Ddb1Q3U1J4 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC23.45■■□□□ 1.34
Ddb1Q3U1J4 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
Ddb1Q3U1J4 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
Ddb1Q3U1J4 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
Ddb1Q3U1J4 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC23.44■■□□□ 1.34
Ddb1Q3U1J4 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC23.44■■□□□ 1.34
Ddb1Q3U1J4 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
Ddb1Q3U1J4 Gm12085-201ENSMUST00000119263 940 ntBASIC23.44■■□□□ 1.34
Ddb1Q3U1J4 C130032M10Rik-201ENSMUST00000180393 728 ntAPPRIS P1 BASIC23.44■■□□□ 1.34
Ddb1Q3U1J4 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC23.44■■□□□ 1.34
Ddb1Q3U1J4 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
Ddb1Q3U1J4 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
Ddb1Q3U1J4 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
Retrieved 100 of 76,532 protein–RNA pairs in 20.9 ms