Protein–RNA interactions for Protein: P49135

Ercc3, General transcription and DNA repair factor IIH helicase subunit XPB, mousemouse

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ercc3P49135 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
Ercc3P49135 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC21.8■■□□□ 1.08
Ercc3P49135 Acp4-203ENSMUST00000118216 1454 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
Ercc3P49135 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC21.8■■□□□ 1.08
Ercc3P49135 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
Ercc3P49135 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
Ercc3P49135 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Ercc3P49135 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
Ercc3P49135 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Ercc3P49135 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC21.8■■□□□ 1.08
Ercc3P49135 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Ercc3P49135 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Ercc3P49135 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
Ercc3P49135 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Ercc3P49135 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC21.79■■□□□ 1.08
Ercc3P49135 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Ercc3P49135 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
Ercc3P49135 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Ercc3P49135 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Ercc3P49135 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Ercc3P49135 Gm42922-201ENSMUST00000195887 2078 ntBASIC21.78■■□□□ 1.08
Ercc3P49135 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Ercc3P49135 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
Ercc3P49135 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
Ercc3P49135 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Ercc3P49135 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Ercc3P49135 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Ercc3P49135 Arrb2-204ENSMUST00000102564 1848 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Ercc3P49135 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Ercc3P49135 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
Ercc3P49135 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC21.77■■□□□ 1.08
Ercc3P49135 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
Ercc3P49135 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Ercc3P49135 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Ercc3P49135 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Ercc3P49135 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
Ercc3P49135 Spcs1-207ENSMUST00000228767 1008 ntBASIC21.77■■□□□ 1.08
Ercc3P49135 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Ercc3P49135 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC21.77■■□□□ 1.08
Ercc3P49135 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC21.77■■□□□ 1.08
Ercc3P49135 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
Ercc3P49135 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Ercc3P49135 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Ercc3P49135 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
Ercc3P49135 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC21.76■■□□□ 1.07
Ercc3P49135 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC21.76■■□□□ 1.07
Ercc3P49135 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC21.76■■□□□ 1.07
Ercc3P49135 1700067K01Rik-203ENSMUST00000172548 986 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Ercc3P49135 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Ercc3P49135 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Ercc3P49135 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Ercc3P49135 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Ercc3P49135 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Ercc3P49135 Insig2-201ENSMUST00000003818 2697 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Ercc3P49135 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC21.75■■□□□ 1.07
Ercc3P49135 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Ercc3P49135 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Ercc3P49135 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC21.75■■□□□ 1.07
Ercc3P49135 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Ercc3P49135 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Ercc3P49135 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC21.75■■□□□ 1.07
Ercc3P49135 Gm44672-201ENSMUST00000206944 1098 ntBASIC21.75■■□□□ 1.07
Ercc3P49135 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC21.75■■□□□ 1.07
Ercc3P49135 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Ercc3P49135 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Ercc3P49135 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Ercc3P49135 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
Ercc3P49135 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Ercc3P49135 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Ercc3P49135 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
Ercc3P49135 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC21.74■■□□□ 1.07
Ercc3P49135 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
Ercc3P49135 Gm26524-201ENSMUST00000192339 390 ntBASIC21.74■■□□□ 1.07
Ercc3P49135 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC21.74■■□□□ 1.07
Ercc3P49135 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Ercc3P49135 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC21.74■■□□□ 1.07
Ercc3P49135 Gm4968-201ENSMUST00000071458 858 ntBASIC21.74■■□□□ 1.07
Ercc3P49135 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Ercc3P49135 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Ercc3P49135 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Ercc3P49135 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Ercc3P49135 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC21.73■■□□□ 1.07
Ercc3P49135 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC21.73■■□□□ 1.07
Ercc3P49135 Rbm43-201ENSMUST00000102767 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Ercc3P49135 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Ercc3P49135 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Ercc3P49135 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Ercc3P49135 Gm8309-201ENSMUST00000206627 1448 ntBASIC21.72■■□□□ 1.07
Ercc3P49135 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Ercc3P49135 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Ercc3P49135 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Ercc3P49135 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
Ercc3P49135 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Ercc3P49135 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
Ercc3P49135 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Ercc3P49135 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Ercc3P49135 Wnt10a-201ENSMUST00000006718 2468 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Ercc3P49135 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Ercc3P49135 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Ercc3P49135 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
Retrieved 100 of 76,532 protein–RNA pairs in 49.4 ms