Protein–RNA interactions for Protein: P13705

Msh3, DNA mismatch repair protein Msh3, mousemouse

Predictions only

Length 1,091 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh3P13705 Fstl3-201ENSMUST00000020575 1955 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Msh3P13705 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Msh3P13705 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC20.29■□□□□ 0.84
Msh3P13705 Gm37179-201ENSMUST00000194862 823 ntBASIC20.29■□□□□ 0.84
Msh3P13705 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC20.29■□□□□ 0.84
Msh3P13705 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC20.29■□□□□ 0.84
Msh3P13705 Tfdp2-209ENSMUST00000188750 1713 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
Msh3P13705 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC20.29■□□□□ 0.84
Msh3P13705 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Msh3P13705 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC20.29■□□□□ 0.84
Msh3P13705 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Msh3P13705 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC20.28■□□□□ 0.84
Msh3P13705 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
Msh3P13705 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Msh3P13705 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
Msh3P13705 Slc7a6os-201ENSMUST00000035925 1246 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Msh3P13705 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
Msh3P13705 Zc3h15-201ENSMUST00000081591 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Msh3P13705 Ehmt2-201ENSMUST00000013931 4026 ntAPPRIS P4 TSL 1 (best) BASIC20.28■□□□□ 0.84
Msh3P13705 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
Msh3P13705 Gm5953-201ENSMUST00000220644 2616 ntBASIC20.28■□□□□ 0.84
Msh3P13705 Tgds-204ENSMUST00000228543 1594 ntBASIC20.28■□□□□ 0.84
Msh3P13705 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Msh3P13705 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
Msh3P13705 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Msh3P13705 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Msh3P13705 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Msh3P13705 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Msh3P13705 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
Msh3P13705 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Msh3P13705 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Msh3P13705 Bmp8a-202ENSMUST00000102641 1917 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
Msh3P13705 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Msh3P13705 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
Msh3P13705 Egln2-202ENSMUST00000108382 1756 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
Msh3P13705 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC20.27■□□□□ 0.84
Msh3P13705 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Msh3P13705 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC20.27■□□□□ 0.84
Msh3P13705 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
Msh3P13705 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC20.27■□□□□ 0.84
Msh3P13705 Dap-205ENSMUST00000186547 535 ntTSL 3 BASIC20.27■□□□□ 0.84
Msh3P13705 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC20.27■□□□□ 0.84
Msh3P13705 Chrac1-201ENSMUST00000089765 871 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Msh3P13705 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Msh3P13705 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Msh3P13705 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC20.27■□□□□ 0.84
Msh3P13705 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Msh3P13705 Rassf1-201ENSMUST00000010211 1727 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
Msh3P13705 Schip1-203ENSMUST00000170788 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Msh3P13705 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.83
Msh3P13705 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Msh3P13705 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Msh3P13705 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Msh3P13705 Gabarap-201ENSMUST00000018711 1351 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Msh3P13705 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
Msh3P13705 Rab20-201ENSMUST00000033900 1392 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Msh3P13705 Prcd-201ENSMUST00000106381 724 ntTSL 3 BASIC20.26■□□□□ 0.83
Msh3P13705 Gm9780-201ENSMUST00000184272 350 ntTSL 2 BASIC20.26■□□□□ 0.83
Msh3P13705 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC20.26■□□□□ 0.83
Msh3P13705 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Msh3P13705 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Msh3P13705 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Msh3P13705 Tmem145-202ENSMUST00000119703 1781 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
Msh3P13705 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Msh3P13705 Efna4-201ENSMUST00000029674 1599 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Msh3P13705 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Msh3P13705 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Msh3P13705 Stxbp3-202ENSMUST00000106596 553 ntTSL 2 BASIC20.25■□□□□ 0.83
Msh3P13705 Ltb-201ENSMUST00000025262 1160 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Msh3P13705 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Msh3P13705 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
Msh3P13705 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Msh3P13705 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC20.25■□□□□ 0.83
Msh3P13705 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Msh3P13705 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Msh3P13705 Caml-201ENSMUST00000021963 1382 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Msh3P13705 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Msh3P13705 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC20.24■□□□□ 0.83
Msh3P13705 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Msh3P13705 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Msh3P13705 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
Msh3P13705 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Msh3P13705 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Msh3P13705 Gm26524-201ENSMUST00000192339 390 ntBASIC20.24■□□□□ 0.83
Msh3P13705 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Msh3P13705 Tfeb-203ENSMUST00000113284 1974 ntTSL 5 BASIC20.24■□□□□ 0.83
Msh3P13705 Gm38345-201ENSMUST00000192635 1748 ntBASIC20.24■□□□□ 0.83
Msh3P13705 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Msh3P13705 Pomgnt2-207ENSMUST00000217610 2413 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Msh3P13705 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Msh3P13705 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Msh3P13705 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
Msh3P13705 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC20.23■□□□□ 0.83
Msh3P13705 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC20.23■□□□□ 0.83
Msh3P13705 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Msh3P13705 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Msh3P13705 Gm5464-201ENSMUST00000100453 2156 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
Msh3P13705 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
Msh3P13705 Gm12933-201ENSMUST00000120203 872 ntBASIC20.23■□□□□ 0.83
Msh3P13705 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 22.5 ms