Protein–RNA interactions for Protein: O35988

Sdc4, Syndecan-4, mousemouse

Known RBP Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc4O35988 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
Sdc4O35988 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Sdc4O35988 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Sdc4O35988 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Sdc4O35988 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
Sdc4O35988 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Sdc4O35988 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Sdc4O35988 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
Sdc4O35988 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Sdc4O35988 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Sdc4O35988 Gm18688-201ENSMUST00000204695 1859 ntBASIC18.93■□□□□ 0.62
Sdc4O35988 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Sdc4O35988 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC18.93■□□□□ 0.62
Sdc4O35988 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC18.93■□□□□ 0.62
Sdc4O35988 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Sdc4O35988 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC18.93■□□□□ 0.62
Sdc4O35988 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC18.93■□□□□ 0.62
Sdc4O35988 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC18.93■□□□□ 0.62
Sdc4O35988 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
Sdc4O35988 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
Sdc4O35988 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Sdc4O35988 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Sdc4O35988 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Sdc4O35988 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Sdc4O35988 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Sdc4O35988 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Sdc4O35988 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
Sdc4O35988 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Sdc4O35988 Zfp467-209ENSMUST00000114566 543 ntTSL 3 BASIC18.92■□□□□ 0.62
Sdc4O35988 Gm22325-201ENSMUST00000158904 308 ntBASIC18.92■□□□□ 0.62
Sdc4O35988 Gm18666-201ENSMUST00000190039 958 ntBASIC18.92■□□□□ 0.62
Sdc4O35988 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Sdc4O35988 4833428L15Rik-202ENSMUST00000215652 641 ntTSL 3 BASIC18.92■□□□□ 0.62
Sdc4O35988 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
Sdc4O35988 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Sdc4O35988 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Sdc4O35988 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Sdc4O35988 Flg-201ENSMUST00000050758 1488 ntBASIC18.91■□□□□ 0.62
Sdc4O35988 Gm11249-201ENSMUST00000117071 859 ntBASIC18.91■□□□□ 0.62
Sdc4O35988 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Sdc4O35988 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Sdc4O35988 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Sdc4O35988 Hmga1-202ENSMUST00000117254 1328 ntAPPRIS P3 TSL 2 BASIC18.91■□□□□ 0.62
Sdc4O35988 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Sdc4O35988 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Sdc4O35988 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Sdc4O35988 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC18.9■□□□□ 0.62
Sdc4O35988 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Sdc4O35988 Gm3020-202ENSMUST00000167430 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Sdc4O35988 Gm10409-201ENSMUST00000170123 1933 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Sdc4O35988 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Sdc4O35988 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
Sdc4O35988 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
Sdc4O35988 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Sdc4O35988 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Sdc4O35988 Icam2-201ENSMUST00000001055 1282 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Sdc4O35988 Gm5643-201ENSMUST00000117081 966 ntBASIC18.9■□□□□ 0.62
Sdc4O35988 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC18.9■□□□□ 0.62
Sdc4O35988 Stmn1-201ENSMUST00000030636 1060 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Sdc4O35988 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Sdc4O35988 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Sdc4O35988 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
Sdc4O35988 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Sdc4O35988 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Sdc4O35988 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Sdc4O35988 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
Sdc4O35988 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
Sdc4O35988 Mboat4-201ENSMUST00000095345 1836 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Sdc4O35988 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Sdc4O35988 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Sdc4O35988 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC18.89■□□□□ 0.61
Sdc4O35988 Dnajb2-201ENSMUST00000055223 1199 ntTSL 5 BASIC18.89■□□□□ 0.61
Sdc4O35988 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Sdc4O35988 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
Sdc4O35988 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Sdc4O35988 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Sdc4O35988 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Sdc4O35988 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC18.88■□□□□ 0.61
Sdc4O35988 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
Sdc4O35988 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC18.88■□□□□ 0.61
Sdc4O35988 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Sdc4O35988 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Sdc4O35988 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Sdc4O35988 Dapk1-207ENSMUST00000226059 5009 ntBASIC18.88■□□□□ 0.61
Sdc4O35988 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
Sdc4O35988 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC18.88■□□□□ 0.61
Sdc4O35988 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
Sdc4O35988 Wnt10b-205ENSMUST00000226846 1204 ntBASIC18.88■□□□□ 0.61
Sdc4O35988 AC107452.1-201ENSMUST00000227963 481 ntBASIC18.88■□□□□ 0.61
Sdc4O35988 Gm26657-201ENSMUST00000181745 1308 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
Sdc4O35988 Iscu-202ENSMUST00000112311 1395 ntTSL 2 BASIC18.88■□□□□ 0.61
Sdc4O35988 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC18.88■□□□□ 0.61
Sdc4O35988 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
Sdc4O35988 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
Sdc4O35988 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Sdc4O35988 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Sdc4O35988 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Sdc4O35988 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Sdc4O35988 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
Sdc4O35988 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Retrieved 100 of 76,532 protein–RNA pairs in 28.1 ms