Protein–RNA interactions for Protein: A0A0A6YYE2

Trbv3, T cell receptor beta, variable 3 (Fragment), mousemouse

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv3A0A0A6YYE2 Arhgap35-201ENSMUST00000075845 9147 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trbv3A0A0A6YYE2 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC14.21□□□□□ -0.13
Trbv3A0A0A6YYE2 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC14.21□□□□□ -0.13
Trbv3A0A0A6YYE2 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trbv3A0A0A6YYE2 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Trbv3A0A0A6YYE2 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC14.21□□□□□ -0.13
Trbv3A0A0A6YYE2 Gm9194-201ENSMUST00000220749 1447 ntBASIC14.21□□□□□ -0.13
Trbv3A0A0A6YYE2 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Trbv3A0A0A6YYE2 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Trbv3A0A0A6YYE2 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Trbv3A0A0A6YYE2 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.14
Trbv3A0A0A6YYE2 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Trbv3A0A0A6YYE2 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
Trbv3A0A0A6YYE2 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Trbv3A0A0A6YYE2 Ntmt1-201ENSMUST00000041830 1387 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Trbv3A0A0A6YYE2 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Trbv3A0A0A6YYE2 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC14.2□□□□□ -0.14
Trbv3A0A0A6YYE2 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trbv3A0A0A6YYE2 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trbv3A0A0A6YYE2 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Trbv3A0A0A6YYE2 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
Trbv3A0A0A6YYE2 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Trbv3A0A0A6YYE2 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trbv3A0A0A6YYE2 Gm9954-202ENSMUST00000198686 4725 ntBASIC14.2□□□□□ -0.14
Trbv3A0A0A6YYE2 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trbv3A0A0A6YYE2 Kcnma1-215ENSMUST00000190339 890 ntTSL 5 BASIC14.2□□□□□ -0.14
Trbv3A0A0A6YYE2 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trbv3A0A0A6YYE2 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trbv3A0A0A6YYE2 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trbv3A0A0A6YYE2 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Trbv3A0A0A6YYE2 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trbv3A0A0A6YYE2 Gm43672-201ENSMUST00000199072 1731 ntBASIC14.2□□□□□ -0.14
Trbv3A0A0A6YYE2 Csnk2a2-203ENSMUST00000212214 6779 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trbv3A0A0A6YYE2 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trbv3A0A0A6YYE2 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trbv3A0A0A6YYE2 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Trbv3A0A0A6YYE2 Tbc1d2b-202ENSMUST00000128874 3473 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Trbv3A0A0A6YYE2 Ube2z-201ENSMUST00000100528 3997 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trbv3A0A0A6YYE2 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
Trbv3A0A0A6YYE2 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
Trbv3A0A0A6YYE2 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Trbv3A0A0A6YYE2 Srcap-202ENSMUST00000098025 1257 ntTSL 5 BASIC14.19□□□□□ -0.14
Trbv3A0A0A6YYE2 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trbv3A0A0A6YYE2 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trbv3A0A0A6YYE2 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC14.19□□□□□ -0.14
Trbv3A0A0A6YYE2 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trbv3A0A0A6YYE2 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trbv3A0A0A6YYE2 Zbtb32-202ENSMUST00000108151 1775 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
Trbv3A0A0A6YYE2 Rcn1-201ENSMUST00000006128 2720 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trbv3A0A0A6YYE2 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trbv3A0A0A6YYE2 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trbv3A0A0A6YYE2 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trbv3A0A0A6YYE2 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC14.18□□□□□ -0.14
Trbv3A0A0A6YYE2 Khsrp-201ENSMUST00000007814 3990 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trbv3A0A0A6YYE2 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC14.18□□□□□ -0.14
Trbv3A0A0A6YYE2 Kcnk15-201ENSMUST00000044798 1199 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trbv3A0A0A6YYE2 Arpc4-201ENSMUST00000156898 2270 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trbv3A0A0A6YYE2 Jmy-201ENSMUST00000065537 8776 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trbv3A0A0A6YYE2 Mff-202ENSMUST00000078332 1894 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trbv3A0A0A6YYE2 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trbv3A0A0A6YYE2 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trbv3A0A0A6YYE2 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trbv3A0A0A6YYE2 Gm10461-201ENSMUST00000202073 4786 ntBASIC14.18□□□□□ -0.14
Trbv3A0A0A6YYE2 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Trbv3A0A0A6YYE2 Gpr137-203ENSMUST00000099776 1569 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Trbv3A0A0A6YYE2 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Trbv3A0A0A6YYE2 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trbv3A0A0A6YYE2 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
Trbv3A0A0A6YYE2 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Trbv3A0A0A6YYE2 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trbv3A0A0A6YYE2 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trbv3A0A0A6YYE2 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trbv3A0A0A6YYE2 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC14.17□□□□□ -0.14
Trbv3A0A0A6YYE2 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Trbv3A0A0A6YYE2 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC14.17□□□□□ -0.14
Trbv3A0A0A6YYE2 Gm18755-201ENSMUST00000218030 1099 ntBASIC14.17□□□□□ -0.14
Trbv3A0A0A6YYE2 A930017K11Rik-201ENSMUST00000162431 2539 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trbv3A0A0A6YYE2 Mid2-202ENSMUST00000112990 6271 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
Trbv3A0A0A6YYE2 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trbv3A0A0A6YYE2 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
Trbv3A0A0A6YYE2 Nfil3-201ENSMUST00000071065 2026 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trbv3A0A0A6YYE2 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
Trbv3A0A0A6YYE2 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Trbv3A0A0A6YYE2 Fiz1-208ENSMUST00000208944 2306 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trbv3A0A0A6YYE2 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trbv3A0A0A6YYE2 Selenof-201ENSMUST00000082437 1514 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trbv3A0A0A6YYE2 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trbv3A0A0A6YYE2 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trbv3A0A0A6YYE2 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trbv3A0A0A6YYE2 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trbv3A0A0A6YYE2 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trbv3A0A0A6YYE2 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC14.16□□□□□ -0.14
Trbv3A0A0A6YYE2 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Trbv3A0A0A6YYE2 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Trbv3A0A0A6YYE2 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Trbv3A0A0A6YYE2 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
Trbv3A0A0A6YYE2 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC14.16□□□□□ -0.14
Trbv3A0A0A6YYE2 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC14.16□□□□□ -0.14
Trbv3A0A0A6YYE2 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
Trbv3A0A0A6YYE2 Lin7a-203ENSMUST00000218031 1769 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 75.6 ms