Protein–RNA interactions for Protein: A0A075B5Z4

Trav1, T cell receptor alpha variable 1 (Fragment), mousemouse

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav1A0A075B5Z4 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trav1A0A075B5Z4 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Trav1A0A075B5Z4 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC17.11■□□□□ 0.33
Trav1A0A075B5Z4 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Trav1A0A075B5Z4 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trav1A0A075B5Z4 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trav1A0A075B5Z4 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Trav1A0A075B5Z4 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trav1A0A075B5Z4 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trav1A0A075B5Z4 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trav1A0A075B5Z4 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trav1A0A075B5Z4 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trav1A0A075B5Z4 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trav1A0A075B5Z4 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trav1A0A075B5Z4 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trav1A0A075B5Z4 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Trav1A0A075B5Z4 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trav1A0A075B5Z4 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trav1A0A075B5Z4 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Trav1A0A075B5Z4 Gm5828-201ENSMUST00000071842 1860 ntBASIC17.1■□□□□ 0.33
Trav1A0A075B5Z4 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trav1A0A075B5Z4 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
Trav1A0A075B5Z4 AC099934.2-201ENSMUST00000196389 70 ntBASIC17.1■□□□□ 0.33
Trav1A0A075B5Z4 AC156953.1-201ENSMUST00000196953 70 ntBASIC17.1■□□□□ 0.33
Trav1A0A075B5Z4 Gm42778-201ENSMUST00000199644 553 ntBASIC17.1■□□□□ 0.33
Trav1A0A075B5Z4 AC157822.2-201ENSMUST00000200291 70 ntBASIC17.1■□□□□ 0.33
Trav1A0A075B5Z4 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC17.1■□□□□ 0.33
Trav1A0A075B5Z4 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC17.1■□□□□ 0.33
Trav1A0A075B5Z4 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trav1A0A075B5Z4 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trav1A0A075B5Z4 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Trav1A0A075B5Z4 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Trav1A0A075B5Z4 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Trav1A0A075B5Z4 Rasgrp2-224ENSMUST00000167240 2192 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Trav1A0A075B5Z4 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trav1A0A075B5Z4 Gm44832-201ENSMUST00000208849 2303 ntBASIC17.09■□□□□ 0.33
Trav1A0A075B5Z4 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC17.09■□□□□ 0.33
Trav1A0A075B5Z4 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
Trav1A0A075B5Z4 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Trav1A0A075B5Z4 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC17.09■□□□□ 0.33
Trav1A0A075B5Z4 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Trav1A0A075B5Z4 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Trav1A0A075B5Z4 Adam22-205ENSMUST00000115385 2318 ntTSL 2 BASIC17.09■□□□□ 0.33
Trav1A0A075B5Z4 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
Trav1A0A075B5Z4 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Trav1A0A075B5Z4 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
Trav1A0A075B5Z4 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
Trav1A0A075B5Z4 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trav1A0A075B5Z4 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trav1A0A075B5Z4 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trav1A0A075B5Z4 Mrpl2-201ENSMUST00000002844 1031 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trav1A0A075B5Z4 Rasl10a-201ENSMUST00000037218 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trav1A0A075B5Z4 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trav1A0A075B5Z4 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC17.08■□□□□ 0.32
Trav1A0A075B5Z4 Abhd5-202ENSMUST00000111497 2576 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Trav1A0A075B5Z4 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC17.08■□□□□ 0.32
Trav1A0A075B5Z4 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trav1A0A075B5Z4 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Trav1A0A075B5Z4 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC17.07■□□□□ 0.32
Trav1A0A075B5Z4 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trav1A0A075B5Z4 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trav1A0A075B5Z4 Tgds-204ENSMUST00000228543 1594 ntBASIC17.07■□□□□ 0.32
Trav1A0A075B5Z4 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trav1A0A075B5Z4 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC17.07■□□□□ 0.32
Trav1A0A075B5Z4 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trav1A0A075B5Z4 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
Trav1A0A075B5Z4 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC17.07■□□□□ 0.32
Trav1A0A075B5Z4 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Trav1A0A075B5Z4 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC17.07■□□□□ 0.32
Trav1A0A075B5Z4 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC17.07■□□□□ 0.32
Trav1A0A075B5Z4 Ap3s1-204ENSMUST00000225520 957 ntBASIC17.07■□□□□ 0.32
Trav1A0A075B5Z4 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trav1A0A075B5Z4 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Trav1A0A075B5Z4 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trav1A0A075B5Z4 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Trav1A0A075B5Z4 Schip1-203ENSMUST00000170788 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trav1A0A075B5Z4 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trav1A0A075B5Z4 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Trav1A0A075B5Z4 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trav1A0A075B5Z4 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Trav1A0A075B5Z4 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Trav1A0A075B5Z4 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trav1A0A075B5Z4 Fstl3-201ENSMUST00000020575 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trav1A0A075B5Z4 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trav1A0A075B5Z4 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trav1A0A075B5Z4 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trav1A0A075B5Z4 Gnb2-204ENSMUST00000111027 1610 ntTSL 5 BASIC17.06■□□□□ 0.32
Trav1A0A075B5Z4 Anks1b-225ENSMUST00000182966 1625 ntTSL 5 BASIC17.06■□□□□ 0.32
Trav1A0A075B5Z4 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trav1A0A075B5Z4 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Trav1A0A075B5Z4 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trav1A0A075B5Z4 Mdfic-202ENSMUST00000120512 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trav1A0A075B5Z4 Arhgef9-208ENSMUST00000128565 2285 ntTSL 5 BASIC17.05■□□□□ 0.32
Trav1A0A075B5Z4 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trav1A0A075B5Z4 Keap1-204ENSMUST00000193982 2163 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trav1A0A075B5Z4 Egln2-202ENSMUST00000108382 1756 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
Trav1A0A075B5Z4 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Trav1A0A075B5Z4 Gm43672-201ENSMUST00000199072 1731 ntBASIC17.05■□□□□ 0.32
Trav1A0A075B5Z4 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
Trav1A0A075B5Z4 Tpd52l1-201ENSMUST00000000305 1308 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 21.4 ms