Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Gm10780-201ENSMUST00000099459 285 ntBASIC6.63□□□□□ -1.35
Col8a1Q00780 Srcap-214ENSMUST00000190390 9633 ntAPPRIS ALT2 TSL 5 BASIC6.63□□□□□ -1.35
Col8a1Q00780 Efcab5-201ENSMUST00000108400 4654 ntAPPRIS P1 TSL 5 BASIC6.63□□□□□ -1.35
Col8a1Q00780 Ankrd6-203ENSMUST00000084749 4573 ntAPPRIS P2 TSL 5 BASIC6.63□□□□□ -1.35
Col8a1Q00780 Pcdh19-203ENSMUST00000167944 8407 ntAPPRIS ALT2 TSL 5 BASIC6.63□□□□□ -1.35
Col8a1Q00780 C1qtnf7-201ENSMUST00000076939 3879 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
Col8a1Q00780 Atxn7l1-210ENSMUST00000144586 3042 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
Col8a1Q00780 E330035G20Rik-201ENSMUST00000221094 3002 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
Col8a1Q00780 Ccnyl1-201ENSMUST00000094898 2923 ntAPPRIS P1 TSL 5 BASIC6.63□□□□□ -1.35
Col8a1Q00780 Gm28307-201ENSMUST00000190685 2694 ntTSL 1 (best) BASIC6.63□□□□□ -1.35
Col8a1Q00780 Gm37121-201ENSMUST00000192219 2556 ntBASIC6.63□□□□□ -1.35
Col8a1Q00780 Gm7562-201ENSMUST00000210502 2537 ntBASIC6.62□□□□□ -1.35
Col8a1Q00780 Idh3a-201ENSMUST00000167866 2403 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
Col8a1Q00780 Hepacam2-201ENSMUST00000049985 2328 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
Col8a1Q00780 Gm17137-201ENSMUST00000164106 4371 ntBASIC6.62□□□□□ -1.35
Col8a1Q00780 Nek7-203ENSMUST00000187407 4336 ntAPPRIS P1 TSL 5 BASIC6.62□□□□□ -1.35
Col8a1Q00780 Naip1-202ENSMUST00000221727 1968 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
Col8a1Q00780 Ift122-202ENSMUST00000112923 3765 ntAPPRIS ALT2 TSL 5 BASIC6.62□□□□□ -1.35
Col8a1Q00780 Gm44752-201ENSMUST00000207140 3305 ntBASIC6.62□□□□□ -1.35
Col8a1Q00780 C2cd3-202ENSMUST00000098259 6602 ntAPPRIS ALT2 TSL 5 BASIC6.62□□□□□ -1.35
Col8a1Q00780 Nphp3-207ENSMUST00000194774 4722 ntAPPRIS ALT2 TSL 1 (best) BASIC6.62□□□□□ -1.35
Col8a1Q00780 Olfr1315-ps1-203ENSMUST00000217078 1559 ntAPPRIS P5 TSL 5 BASIC6.62□□□□□ -1.35
Col8a1Q00780 Slc26a9-201ENSMUST00000049027 4739 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
Col8a1Q00780 Mdc1-201ENSMUST00000082337 7335 ntAPPRIS P1 TSL 5 BASIC6.62□□□□□ -1.35
Col8a1Q00780 Gm15880-201ENSMUST00000142678 2884 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
Col8a1Q00780 Gm17083-201ENSMUST00000165849 1366 ntBASIC6.62□□□□□ -1.35
Col8a1Q00780 Cbll1-205ENSMUST00000188326 1399 ntTSL 2 BASIC6.62□□□□□ -1.35
Col8a1Q00780 Osbpl1a-202ENSMUST00000117361 2687 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
Col8a1Q00780 Olfr765-202ENSMUST00000216460 2594 ntAPPRIS P1 TSL 5 BASIC6.62□□□□□ -1.35
Col8a1Q00780 Igkv3-4-201ENSMUST00000103401 360 ntAPPRIS P1 BASIC6.62□□□□□ -1.35
Col8a1Q00780 Olfr639-201ENSMUST00000106862 1020 ntAPPRIS P1 BASIC6.62□□□□□ -1.35
Col8a1Q00780 Homer1-208ENSMUST00000109495 813 ntTSL 5 BASIC6.62□□□□□ -1.35
Col8a1Q00780 Gm9112-201ENSMUST00000113610 420 ntAPPRIS P1 TSL 2 BASIC6.62□□□□□ -1.35
Col8a1Q00780 Gm14279-201ENSMUST00000117142 332 ntBASIC6.62□□□□□ -1.35
Col8a1Q00780 Rpl35a-ps2-201ENSMUST00000117444 333 ntBASIC6.62□□□□□ -1.35
Col8a1Q00780 Gm10243-201ENSMUST00000117571 333 ntBASIC6.62□□□□□ -1.35
Col8a1Q00780 Gm11810-201ENSMUST00000118311 333 ntBASIC6.62□□□□□ -1.35
Col8a1Q00780 Rpl35a-ps4-201ENSMUST00000121779 333 ntBASIC6.62□□□□□ -1.35
Col8a1Q00780 Gm13673-201ENSMUST00000122056 531 ntBASIC6.62□□□□□ -1.35
Col8a1Q00780 Prlr-204ENSMUST00000128450 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC6.62□□□□□ -1.35
Col8a1Q00780 1700011I03Rik-204ENSMUST00000135806 831 ntAPPRIS ALT2 TSL 1 (best) BASIC6.62□□□□□ -1.35
Col8a1Q00780 Rpl35a-ps3-201ENSMUST00000147311 333 ntBASIC6.62□□□□□ -1.35
Col8a1Q00780 Rpl35a-ps6-201ENSMUST00000148282 333 ntBASIC6.62□□□□□ -1.35
Col8a1Q00780 Gm14950-201ENSMUST00000149500 1155 ntTSL 5 BASIC6.62□□□□□ -1.35
Col8a1Q00780 Vmn2r-ps64-201ENSMUST00000173690 523 ntBASIC6.62□□□□□ -1.35
Col8a1Q00780 Gm19807-201ENSMUST00000173971 667 ntBASIC6.62□□□□□ -1.35
Col8a1Q00780 Cers6-206ENSMUST00000176018 1279 ntAPPRIS ALT1 TSL 5 BASIC6.62□□□□□ -1.35
Col8a1Q00780 Gm5973-201ENSMUST00000178542 496 ntBASIC6.62□□□□□ -1.35
Col8a1Q00780 Gm21971-201ENSMUST00000180187 337 ntTSL 5 BASIC6.62□□□□□ -1.35
Col8a1Q00780 Gm21312-202ENSMUST00000180889 1246 ntAPPRIS ALT2 TSL 2 BASIC6.62□□□□□ -1.35
Col8a1Q00780 Gm21304-202ENSMUST00000181059 1246 ntAPPRIS P1 TSL 2 BASIC6.62□□□□□ -1.35
Col8a1Q00780 Gm8764-202ENSMUST00000181179 1246 ntAPPRIS P1 TSL 2 BASIC6.62□□□□□ -1.35
Col8a1Q00780 Gm6763-202ENSMUST00000181287 1246 ntAPPRIS P1 TSL 2 BASIC6.62□□□□□ -1.35
Col8a1Q00780 Gm21293-203ENSMUST00000181634 1246 ntAPPRIS P1 TSL 2 BASIC6.62□□□□□ -1.35
Col8a1Q00780 Gm20765-202ENSMUST00000181703 1246 ntAPPRIS ALT2 TSL 2 BASIC6.62□□□□□ -1.35
Col8a1Q00780 Gm26974-201ENSMUST00000182054 875 ntTSL 2 BASIC6.62□□□□□ -1.35
Col8a1Q00780 Gm26914-201ENSMUST00000182262 223 ntBASIC6.62□□□□□ -1.35
Col8a1Q00780 Mir7046-201ENSMUST00000183435 66 ntBASIC6.62□□□□□ -1.35
Col8a1Q00780 Gm28619-201ENSMUST00000185889 622 ntTSL 5 BASIC6.62□□□□□ -1.35
Col8a1Q00780 Gm28426-201ENSMUST00000187385 620 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
Col8a1Q00780 Gm18303-201ENSMUST00000190055 1176 ntBASIC6.62□□□□□ -1.35
Col8a1Q00780 Gm18529-201ENSMUST00000193025 1257 ntBASIC6.62□□□□□ -1.35
Col8a1Q00780 Gm8182-201ENSMUST00000197863 769 ntBASIC6.62□□□□□ -1.35
Col8a1Q00780 Hcfc1r1-ps1-201ENSMUST00000198911 346 ntBASIC6.62□□□□□ -1.35
Col8a1Q00780 Gm43806-201ENSMUST00000201766 469 ntBASIC6.62□□□□□ -1.35
Col8a1Q00780 Fxyd4-207ENSMUST00000204214 550 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
Col8a1Q00780 E330037G11Rik-201ENSMUST00000204295 1086 ntBASIC6.62□□□□□ -1.35
Col8a1Q00780 Olfr65-202ENSMUST00000209528 1106 ntAPPRIS P2 BASIC6.62□□□□□ -1.35
Col8a1Q00780 Gm45370-201ENSMUST00000211274 483 ntTSL 5 BASIC6.62□□□□□ -1.35
Col8a1Q00780 Gm4247-201ENSMUST00000211441 1042 ntBASIC6.62□□□□□ -1.35
Col8a1Q00780 AL929265.1-201ENSMUST00000213427 125 ntBASIC6.62□□□□□ -1.35
Col8a1Q00780 AC069561.4-201ENSMUST00000215291 572 ntAPPRIS P1 TSL 3 BASIC6.62□□□□□ -1.35
Col8a1Q00780 AC159542.1-201ENSMUST00000218201 450 ntTSL 3 BASIC6.62□□□□□ -1.35
Col8a1Q00780 AC139381.1-201ENSMUST00000224215 478 ntBASIC6.62□□□□□ -1.35
Col8a1Q00780 4932702P03Rik-203ENSMUST00000225028 670 ntBASIC6.62□□□□□ -1.35
Col8a1Q00780 AC099629.1-201ENSMUST00000226778 464 ntBASIC6.62□□□□□ -1.35
Col8a1Q00780 AC080021.1-201ENSMUST00000228104 700 ntBASIC6.62□□□□□ -1.35
Col8a1Q00780 Vmn1r28-203ENSMUST00000228678 909 ntAPPRIS P1 BASIC6.62□□□□□ -1.35
Col8a1Q00780 Cfap126-201ENSMUST00000027959 1034 ntAPPRIS P2 TSL 1 (best) BASIC6.62□□□□□ -1.35
Col8a1Q00780 Dnajc5b-201ENSMUST00000029132 923 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
Col8a1Q00780 Gm22581-201ENSMUST00000083735 136 ntBASIC6.62□□□□□ -1.35
Col8a1Q00780 Gm10247-201ENSMUST00000090395 333 ntBASIC6.62□□□□□ -1.35
Col8a1Q00780 Olfr557-201ENSMUST00000098218 1057 ntAPPRIS P1 BASIC6.62□□□□□ -1.35
Col8a1Q00780 Fbxo16-203ENSMUST00000224629 3781 ntAPPRIS P2 BASIC6.62□□□□□ -1.35
Col8a1Q00780 Gm2694-201ENSMUST00000180700 2314 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
Col8a1Q00780 Tpd52l2-204ENSMUST00000108800 3475 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
Col8a1Q00780 Gm28250-201ENSMUST00000187025 2168 ntTSL 5 BASIC6.62□□□□□ -1.35
Col8a1Q00780 Gm37157-201ENSMUST00000192120 2168 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
Col8a1Q00780 Gm37112-201ENSMUST00000194389 2168 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
Col8a1Q00780 Lhfpl2-204ENSMUST00000121618 4209 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
Col8a1Q00780 Inpp5d-208ENSMUST00000167032 4125 ntTSL 2 BASIC6.62□□□□□ -1.35
Col8a1Q00780 Ankrd27-206ENSMUST00000190503 4086 ntAPPRIS ALT2 TSL 1 (best) BASIC6.62□□□□□ -1.35
Col8a1Q00780 Pdlim5-205ENSMUST00000170361 2010 ntTSL 5 BASIC6.62□□□□□ -1.35
Col8a1Q00780 Adgrl3-205ENSMUST00000117985 4974 ntAPPRIS ALT2 TSL 5 BASIC6.62□□□□□ -1.35
Col8a1Q00780 Adgrl3-212ENSMUST00000120144 4999 ntTSL 5 BASIC6.62□□□□□ -1.35
Col8a1Q00780 Nyap2-201ENSMUST00000068275 4919 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
Col8a1Q00780 Zfat-202ENSMUST00000160248 3866 ntAPPRIS P4 TSL 1 (best) BASIC6.62□□□□□ -1.35
Col8a1Q00780 Olfr975-202ENSMUST00000216647 2848 ntAPPRIS P1 TSL 5 BASIC6.62□□□□□ -1.35
Col8a1Q00780 Rars2-201ENSMUST00000029968 1868 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
Col8a1Q00780 Map4k4-215ENSMUST00000195259 3719 ntAPPRIS ALT2 TSL 1 (best) BASIC6.62□□□□□ -1.35
Retrieved 100 of 76,532 protein–RNA pairs in 85.2 ms