Protein–RNA interactions for Protein: Q6PFD9

Nup98, Nuclear pore complex protein Nup98-Nup96, mousemouse

Known RBP Predictions only

Length 1,816 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup98Q6PFD9 Gm3810-201ENSMUST00000122413 476 ntBASIC8.38□□□□□ -1.07
Nup98Q6PFD9 Gm23756-201ENSMUST00000157582 114 ntBASIC8.38□□□□□ -1.07
Nup98Q6PFD9 Gm22990-201ENSMUST00000175427 89 ntBASIC8.38□□□□□ -1.07
Nup98Q6PFD9 AA465934-205ENSMUST00000177533 308 ntTSL 2 BASIC8.38□□□□□ -1.07
Nup98Q6PFD9 Gm8237-202ENSMUST00000178594 447 ntAPPRIS ALT2 TSL 1 (best) BASIC8.38□□□□□ -1.07
Nup98Q6PFD9 Platr2-201ENSMUST00000180834 521 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
Nup98Q6PFD9 1700003P14Rik-201ENSMUST00000185602 1078 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
Nup98Q6PFD9 Gm17895-201ENSMUST00000194028 874 ntBASIC8.38□□□□□ -1.07
Nup98Q6PFD9 Trav7-1-201ENSMUST00000198019 337 ntAPPRIS P1 BASIC8.38□□□□□ -1.07
Nup98Q6PFD9 Trav13n-1-201ENSMUST00000198359 331 ntAPPRIS P1 BASIC8.38□□□□□ -1.07
Nup98Q6PFD9 Gm43538-201ENSMUST00000200416 849 ntTSL 3 BASIC8.38□□□□□ -1.07
Nup98Q6PFD9 Zfp799-202ENSMUST00000201499 651 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
Nup98Q6PFD9 Gm44386-201ENSMUST00000204288 429 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
Nup98Q6PFD9 Gm32983-201ENSMUST00000208500 505 ntBASIC8.38□□□□□ -1.07
Nup98Q6PFD9 Gm3678-201ENSMUST00000218888 492 ntBASIC8.38□□□□□ -1.07
Nup98Q6PFD9 Cacna1c-222ENSMUST00000190285 6585 ntAPPRIS ALT2 TSL 1 (best) BASIC8.38□□□□□ -1.07
Nup98Q6PFD9 Gm13749-201ENSMUST00000133244 1432 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
Nup98Q6PFD9 Astn1-201ENSMUST00000046110 7195 ntAPPRIS ALT2 TSL 1 (best) BASIC8.38□□□□□ -1.07
Nup98Q6PFD9 Lilra6-202ENSMUST00000090689 1977 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
Nup98Q6PFD9 Nup93-207ENSMUST00000212824 2928 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
Nup98Q6PFD9 Mx1-201ENSMUST00000023655 3385 ntAPPRIS P1 TSL 5 BASIC8.37□□□□□ -1.07
Nup98Q6PFD9 Kif6-207ENSMUST00000162854 3528 ntAPPRIS P1 TSL 5 BASIC8.37□□□□□ -1.07
Nup98Q6PFD9 Ikzf3-201ENSMUST00000103141 3658 ntAPPRIS P1 TSL 5 BASIC8.37□□□□□ -1.07
Nup98Q6PFD9 Usp8-202ENSMUST00000110416 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC8.37□□□□□ -1.07
Nup98Q6PFD9 Usp45-201ENSMUST00000040429 5861 ntAPPRIS ALT2 TSL 1 (best) BASIC8.37□□□□□ -1.07
Nup98Q6PFD9 Pcyt1a-203ENSMUST00000115137 4244 ntTSL 5 BASIC8.37□□□□□ -1.07
Nup98Q6PFD9 Cacna1d-202ENSMUST00000112250 8688 ntAPPRIS P4 TSL 1 (best) BASIC8.37□□□□□ -1.07
Nup98Q6PFD9 Gm9268-202ENSMUST00000173815 2565 ntAPPRIS P2 TSL 5 BASIC8.37□□□□□ -1.07
Nup98Q6PFD9 Gm29091-201ENSMUST00000187289 2159 ntTSL 5 BASIC8.37□□□□□ -1.07
Nup98Q6PFD9 Gm44916-201ENSMUST00000208664 2194 ntBASIC8.37□□□□□ -1.07
Nup98Q6PFD9 Atr-201ENSMUST00000034980 8056 ntTSL 5 BASIC8.37□□□□□ -1.07
Nup98Q6PFD9 CT572985.1-201ENSMUST00000220599 4714 ntBASIC8.37□□□□□ -1.07
Nup98Q6PFD9 Nckap1l-201ENSMUST00000047405 4717 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
Nup98Q6PFD9 Efl1-206ENSMUST00000207868 1537 ntTSL 3 BASIC8.37□□□□□ -1.07
Nup98Q6PFD9 Gm11590-201ENSMUST00000118999 1455 ntBASIC8.37□□□□□ -1.07
Nup98Q6PFD9 Sorbs2-220ENSMUST00000139869 4275 ntAPPRIS ALT2 TSL 1 (best) BASIC8.37□□□□□ -1.07
Nup98Q6PFD9 Gm25785-201ENSMUST00000104129 125 ntBASIC8.37□□□□□ -1.07
Nup98Q6PFD9 Gm11472-201ENSMUST00000121305 556 ntBASIC8.37□□□□□ -1.07
Nup98Q6PFD9 Gm12540-201ENSMUST00000121938 319 ntBASIC8.37□□□□□ -1.07
Nup98Q6PFD9 Gm20713-201ENSMUST00000176344 435 ntTSL 5 BASIC8.37□□□□□ -1.07
Nup98Q6PFD9 Gm37439-201ENSMUST00000193150 856 ntBASIC8.37□□□□□ -1.07
Nup98Q6PFD9 Gm32585-201ENSMUST00000198586 764 ntTSL 3 BASIC8.37□□□□□ -1.07
Nup98Q6PFD9 Gm31812-201ENSMUST00000210323 1170 ntTSL 3 BASIC8.37□□□□□ -1.07
Nup98Q6PFD9 4930567H12Rik-201ENSMUST00000212260 955 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
Nup98Q6PFD9 AC153567.1-201ENSMUST00000218424 1263 ntTSL 5 BASIC8.37□□□□□ -1.07
Nup98Q6PFD9 AC154640.1-202ENSMUST00000227828 496 ntBASIC8.37□□□□□ -1.07
Nup98Q6PFD9 AC154806.5-204ENSMUST00000228900 867 ntBASIC8.37□□□□□ -1.07
Nup98Q6PFD9 4930522N08Rik-201ENSMUST00000031274 916 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
Nup98Q6PFD9 Mir138-1-201ENSMUST00000083480 99 ntBASIC8.37□□□□□ -1.07
Nup98Q6PFD9 Mpdz-216ENSMUST00000220807 6295 ntAPPRIS ALT2 TSL 5 BASIC8.37□□□□□ -1.07
Nup98Q6PFD9 4930545L23Rik-201ENSMUST00000138303 2502 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
Nup98Q6PFD9 Rnase6-202ENSMUST00000226194 2452 ntAPPRIS P1 BASIC8.37□□□□□ -1.07
Nup98Q6PFD9 Gm37785-201ENSMUST00000195783 2408 ntBASIC8.37□□□□□ -1.07
Nup98Q6PFD9 Gm973-201ENSMUST00000114243 3595 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
Nup98Q6PFD9 Zfp275-201ENSMUST00000033731 6376 ntAPPRIS P3 TSL 1 (best) BASIC8.37□□□□□ -1.07
Nup98Q6PFD9 Gja10-201ENSMUST00000056517 2117 ntAPPRIS P2 BASIC8.37□□□□□ -1.07
Nup98Q6PFD9 Phc3-204ENSMUST00000108255 3468 ntAPPRIS ALT2 TSL 1 (best) BASIC8.37□□□□□ -1.07
Nup98Q6PFD9 Selp-205ENSMUST00000162746 3438 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
Nup98Q6PFD9 Usp14-202ENSMUST00000116669 2019 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
Nup98Q6PFD9 Alms1-201ENSMUST00000072018 9986 ntAPPRIS P2 TSL 1 (best) BASIC8.37□□□□□ -1.07
Nup98Q6PFD9 Gm29571-201ENSMUST00000191547 1909 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
Nup98Q6PFD9 AC155234.1-201ENSMUST00000225610 2823 ntBASIC8.37□□□□□ -1.07
Nup98Q6PFD9 Atp1a4-201ENSMUST00000111243 3470 ntAPPRIS P1 TSL 5 BASIC8.36□□□□□ -1.07
Nup98Q6PFD9 Gm5361-201ENSMUST00000211041 1498 ntBASIC8.36□□□□□ -1.07
Nup98Q6PFD9 AC123832.1-201ENSMUST00000214120 2371 ntBASIC8.36□□□□□ -1.07
Nup98Q6PFD9 Gm14896-201ENSMUST00000121311 1351 ntBASIC8.36□□□□□ -1.07
Nup98Q6PFD9 Tnfrsf19-201ENSMUST00000111234 4051 ntAPPRIS P2 TSL 1 (best) BASIC8.36□□□□□ -1.07
Nup98Q6PFD9 Espl1-201ENSMUST00000064924 6630 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
Nup98Q6PFD9 Fgfbp1-202ENSMUST00000199481 2191 ntAPPRIS P1 BASIC8.36□□□□□ -1.07
Nup98Q6PFD9 1700047F07Rik-201ENSMUST00000140321 543 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
Nup98Q6PFD9 Gm12160-201ENSMUST00000146372 342 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
Nup98Q6PFD9 Gm3585-201ENSMUST00000173438 875 ntBASIC8.36□□□□□ -1.07
Nup98Q6PFD9 Gm23968-201ENSMUST00000175047 125 ntBASIC8.36□□□□□ -1.07
Nup98Q6PFD9 Gtpbp4-ps3-201ENSMUST00000184093 136 ntBASIC8.36□□□□□ -1.07
Nup98Q6PFD9 Gm21877-201ENSMUST00000185640 694 ntBASIC8.36□□□□□ -1.07
Nup98Q6PFD9 Gm29099-201ENSMUST00000187370 760 ntTSL 5 BASIC8.36□□□□□ -1.07
Nup98Q6PFD9 Gm44411-201ENSMUST00000204172 349 ntBASIC8.36□□□□□ -1.07
Nup98Q6PFD9 Usf2-ps1-201ENSMUST00000206657 311 ntBASIC8.36□□□□□ -1.07
Nup98Q6PFD9 AC164295.1-201ENSMUST00000224861 186 ntBASIC8.36□□□□□ -1.07
Nup98Q6PFD9 AC154757.2-201ENSMUST00000228885 743 ntBASIC8.36□□□□□ -1.07
Nup98Q6PFD9 Fshr-201ENSMUST00000035701 2079 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
Nup98Q6PFD9 Tcf7l2-201ENSMUST00000041717 3590 ntAPPRIS ALT2 TSL 1 (best) BASIC8.36□□□□□ -1.07
Nup98Q6PFD9 2610203C20Rik-204ENSMUST00000181214 3525 ntTSL 5 BASIC8.36□□□□□ -1.07
Nup98Q6PFD9 Gm11217-201ENSMUST00000141162 1729 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
Nup98Q6PFD9 Nt5c2-201ENSMUST00000086961 3745 ntTSL 5 BASIC8.36□□□□□ -1.07
Nup98Q6PFD9 Pde10a-207ENSMUST00000115722 3673 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
Nup98Q6PFD9 Gm43422-201ENSMUST00000199780 3571 ntBASIC8.36□□□□□ -1.07
Nup98Q6PFD9 Gm28431-201ENSMUST00000185592 2166 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
Nup98Q6PFD9 Gm28317-201ENSMUST00000187200 2166 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
Nup98Q6PFD9 Gm28681-201ENSMUST00000187387 2166 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
Nup98Q6PFD9 Gm28254-201ENSMUST00000189207 2166 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
Nup98Q6PFD9 Gm29063-201ENSMUST00000190236 2166 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
Nup98Q6PFD9 Gm5512-202ENSMUST00000220222 1522 ntBASIC8.36□□□□□ -1.07
Nup98Q6PFD9 Chil3-201ENSMUST00000063062 1539 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
Nup98Q6PFD9 Cast-210ENSMUST00000223126 2696 ntAPPRIS ALT2 TSL 1 (best) BASIC8.36□□□□□ -1.07
Nup98Q6PFD9 Serpina12-201ENSMUST00000043915 3690 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
Nup98Q6PFD9 Unc5c-204ENSMUST00000130636 3595 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
Nup98Q6PFD9 CT010470.1-201ENSMUST00000225364 1876 ntBASIC8.36□□□□□ -1.07
Nup98Q6PFD9 Crisp4-202ENSMUST00000115340 1179 ntAPPRIS P3 TSL 1 (best) BASIC8.36□□□□□ -1.07
Nup98Q6PFD9 Gm11445-201ENSMUST00000119101 532 ntBASIC8.36□□□□□ -1.07
Retrieved 100 of 76,532 protein–RNA pairs in 70.4 ms