Protein–RNA interactions for Protein: Q9CQ56

Use1, Vesicle transport protein USE1, mousemouse

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Use1Q9CQ56 Gtf2h1-202ENSMUST00000107644 2187 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
Use1Q9CQ56 Sytl2-203ENSMUST00000107211 3790 ntAPPRIS P4 TSL 1 (best) BASIC6.81□□□□□ -1.32
Use1Q9CQ56 Gm13102-201ENSMUST00000097799 2338 ntAPPRIS ALT2 TSL 2 BASIC6.81□□□□□ -1.32
Use1Q9CQ56 Tsr1-201ENSMUST00000045807 3389 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
Use1Q9CQ56 Apobec1-202ENSMUST00000112586 2265 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
Use1Q9CQ56 Bbs12-201ENSMUST00000057975 2433 ntAPPRIS P1 TSL 2 BASIC6.8□□□□□ -1.32
Use1Q9CQ56 Pik3ca-202ENSMUST00000108242 6171 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
Use1Q9CQ56 Gm45843-201ENSMUST00000212317 4597 ntTSL 5 BASIC6.8□□□□□ -1.32
Use1Q9CQ56 Rapgef4os3-201ENSMUST00000132792 3485 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
Use1Q9CQ56 Cnot2-203ENSMUST00000105267 2800 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
Use1Q9CQ56 Gm42611-201ENSMUST00000199446 3407 ntBASIC6.8□□□□□ -1.32
Use1Q9CQ56 Nckap5-204ENSMUST00000112583 7212 ntAPPRIS P3 TSL 5 BASIC6.8□□□□□ -1.32
Use1Q9CQ56 Gm23323-201ENSMUST00000104471 133 ntBASIC6.8□□□□□ -1.32
Use1Q9CQ56 Defa-ps7-201ENSMUST00000117139 168 ntBASIC6.8□□□□□ -1.32
Use1Q9CQ56 Gm12599-201ENSMUST00000120534 792 ntBASIC6.8□□□□□ -1.32
Use1Q9CQ56 Gm11258-201ENSMUST00000121086 1218 ntBASIC6.8□□□□□ -1.32
Use1Q9CQ56 Gm15730-201ENSMUST00000121828 415 ntBASIC6.8□□□□□ -1.32
Use1Q9CQ56 Gm11217-201ENSMUST00000141162 1729 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
Use1Q9CQ56 Gm12868-201ENSMUST00000143801 417 ntTSL 3 BASIC6.8□□□□□ -1.32
Use1Q9CQ56 Klra13-ps-202ENSMUST00000144414 769 ntTSL 5 BASIC6.8□□□□□ -1.32
Use1Q9CQ56 Gm8212-201ENSMUST00000166350 1404 ntAPPRIS P1 TSL 5 BASIC6.8□□□□□ -1.32
Use1Q9CQ56 Nrxn1-214ENSMUST00000173222 859 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
Use1Q9CQ56 Gm26652-201ENSMUST00000180592 373 ntTSL 3 BASIC6.8□□□□□ -1.32
Use1Q9CQ56 Gm5524-201ENSMUST00000185409 2002 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
Use1Q9CQ56 Gm28728-201ENSMUST00000189087 405 ntBASIC6.8□□□□□ -1.32
Use1Q9CQ56 Gm28239-201ENSMUST00000190225 447 ntBASIC6.8□□□□□ -1.32
Use1Q9CQ56 Gm38135-201ENSMUST00000195068 502 ntBASIC6.8□□□□□ -1.32
Use1Q9CQ56 Gm43694-201ENSMUST00000200773 1119 ntBASIC6.8□□□□□ -1.32
Use1Q9CQ56 Gm44983-201ENSMUST00000208121 463 ntTSL 3 BASIC6.8□□□□□ -1.32
Use1Q9CQ56 Gm44982-201ENSMUST00000208795 471 ntBASIC6.8□□□□□ -1.32
Use1Q9CQ56 AC124778.1-201ENSMUST00000216013 162 ntBASIC6.8□□□□□ -1.32
Use1Q9CQ56 AC127254.1-201ENSMUST00000216563 524 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
Use1Q9CQ56 AC166361.1-201ENSMUST00000218567 403 ntTSL 3 BASIC6.8□□□□□ -1.32
Use1Q9CQ56 AC159205.2-201ENSMUST00000223759 816 ntBASIC6.8□□□□□ -1.32
Use1Q9CQ56 Gm21731-202ENSMUST00000223770 886 ntAPPRIS P1 BASIC6.8□□□□□ -1.32
Use1Q9CQ56 AC154806.1-202ENSMUST00000227949 885 ntBASIC6.8□□□□□ -1.32
Use1Q9CQ56 Dph5-201ENSMUST00000043342 1576 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
Use1Q9CQ56 1700049L16Rik-201ENSMUST00000049520 543 ntBASIC6.8□□□□□ -1.32
Use1Q9CQ56 Tmem232-202ENSMUST00000086722 2588 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
Use1Q9CQ56 Zc3h12c-202ENSMUST00000213645 6764 ntAPPRIS ALT2 TSL 5 BASIC6.8□□□□□ -1.32
Use1Q9CQ56 Tpte-201ENSMUST00000077194 2549 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
Use1Q9CQ56 Olfr60-202ENSMUST00000210932 2383 ntAPPRIS P1 TSL 2 BASIC6.8□□□□□ -1.32
Use1Q9CQ56 Irgm2-203ENSMUST00000209079 3528 ntAPPRIS ALT2 TSL 2 BASIC6.8□□□□□ -1.32
Use1Q9CQ56 AC156636.1-201ENSMUST00000218639 2229 ntBASIC6.8□□□□□ -1.32
Use1Q9CQ56 Gm37945-201ENSMUST00000192536 4367 ntBASIC6.8□□□□□ -1.32
Use1Q9CQ56 Pcdh15-205ENSMUST00000105429 6719 ntTSL 5 BASIC6.79□□□□□ -1.32
Use1Q9CQ56 Gm28077-201ENSMUST00000190250 1635 ntTSL 5 BASIC6.79□□□□□ -1.32
Use1Q9CQ56 CT009604.1-201ENSMUST00000223900 1328 ntBASIC6.79□□□□□ -1.32
Use1Q9CQ56 Actl11-201ENSMUST00000085073 3993 ntAPPRIS P1 BASIC6.79□□□□□ -1.32
Use1Q9CQ56 AC123954.1-201ENSMUST00000222404 3272 ntAPPRIS P1 BASIC6.79□□□□□ -1.32
Use1Q9CQ56 Gm42885-201ENSMUST00000200763 4214 ntBASIC6.79□□□□□ -1.32
Use1Q9CQ56 Gm12346-201ENSMUST00000121455 2255 ntBASIC6.79□□□□□ -1.32
Use1Q9CQ56 Gucy1b3-201ENSMUST00000029635 3223 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
Use1Q9CQ56 Gm13040-201ENSMUST00000094521 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC6.79□□□□□ -1.32
Use1Q9CQ56 Clrn1-202ENSMUST00000055636 3083 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
Use1Q9CQ56 AC166574.5-201ENSMUST00000227438 1432 ntBASIC6.79□□□□□ -1.32
Use1Q9CQ56 AC122356.1-202ENSMUST00000227328 2758 ntBASIC6.79□□□□□ -1.32
Use1Q9CQ56 Cxcr2-202ENSMUST00000106899 3046 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
Use1Q9CQ56 Mir704-201ENSMUST00000102106 77 ntBASIC6.79□□□□□ -1.32
Use1Q9CQ56 Mir669e-201ENSMUST00000117003 119 ntBASIC6.79□□□□□ -1.32
Use1Q9CQ56 Gm13521-201ENSMUST00000118922 866 ntBASIC6.79□□□□□ -1.32
Use1Q9CQ56 Gm14016-201ENSMUST00000119095 486 ntBASIC6.79□□□□□ -1.32
Use1Q9CQ56 Olfr1017-ps1-201ENSMUST00000121263 664 ntBASIC6.79□□□□□ -1.32
Use1Q9CQ56 Gm11739-201ENSMUST00000125269 723 ntTSL 3 BASIC6.79□□□□□ -1.32
Use1Q9CQ56 Gm14329-201ENSMUST00000136027 591 ntTSL 3 BASIC6.79□□□□□ -1.32
Use1Q9CQ56 Gm14009-201ENSMUST00000152439 656 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
Use1Q9CQ56 Olfr819-201ENSMUST00000167974 963 ntAPPRIS P2 BASIC6.79□□□□□ -1.32
Use1Q9CQ56 Gm2951-201ENSMUST00000169447 490 ntBASIC6.79□□□□□ -1.32
Use1Q9CQ56 Olfr247-201ENSMUST00000170920 963 ntAPPRIS ALT2 BASIC6.79□□□□□ -1.32
Use1Q9CQ56 Gm27972-201ENSMUST00000184720 137 ntBASIC6.79□□□□□ -1.32
Use1Q9CQ56 1810022K09Rik-202ENSMUST00000185384 435 ntAPPRIS P3 TSL 1 (best) BASIC6.79□□□□□ -1.32
Use1Q9CQ56 Gm9451-201ENSMUST00000188491 604 ntBASIC6.79□□□□□ -1.32
Use1Q9CQ56 Gm28952-201ENSMUST00000189285 681 ntBASIC6.79□□□□□ -1.32
Use1Q9CQ56 Gm29168-201ENSMUST00000189953 687 ntBASIC6.79□□□□□ -1.32
Use1Q9CQ56 Gm29050-202ENSMUST00000190865 502 ntTSL 2 BASIC6.79□□□□□ -1.32
Use1Q9CQ56 Gm42538-201ENSMUST00000196233 566 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
Use1Q9CQ56 Gm42650-201ENSMUST00000197038 575 ntTSL 2 BASIC6.79□□□□□ -1.32
Use1Q9CQ56 Gm30790-202ENSMUST00000208527 809 ntTSL 5 BASIC6.79□□□□□ -1.32
Use1Q9CQ56 Gm45627-201ENSMUST00000210130 977 ntTSL 5 BASIC6.79□□□□□ -1.32
Use1Q9CQ56 Gm7986-201ENSMUST00000221336 551 ntBASIC6.79□□□□□ -1.32
Use1Q9CQ56 CT010472.1-201ENSMUST00000224000 704 ntBASIC6.79□□□□□ -1.32
Use1Q9CQ56 Glycam1-203ENSMUST00000228060 528 ntAPPRIS ALT2 BASIC6.79□□□□□ -1.32
Use1Q9CQ56 AC137950.1-201ENSMUST00000228553 515 ntBASIC6.79□□□□□ -1.32
Use1Q9CQ56 Ino80c-201ENSMUST00000055012 909 ntTSL 5 BASIC6.79□□□□□ -1.32
Use1Q9CQ56 Arl9-201ENSMUST00000071199 402 ntAPPRIS P1 TSL 2 BASIC6.79□□□□□ -1.32
Use1Q9CQ56 Gm10310-201ENSMUST00000095239 963 ntAPPRIS ALT2 BASIC6.79□□□□□ -1.32
Use1Q9CQ56 Phc1-208ENSMUST00000160696 4213 ntAPPRIS P3 TSL 1 (best) BASIC6.79□□□□□ -1.32
Use1Q9CQ56 Fam196b-201ENSMUST00000093192 5031 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
Use1Q9CQ56 Mug-ps1-202ENSMUST00000189975 3293 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
Use1Q9CQ56 Tdrd7-202ENSMUST00000107777 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC6.79□□□□□ -1.32
Use1Q9CQ56 Gm20768-201ENSMUST00000199527 2338 ntBASIC6.79□□□□□ -1.32
Use1Q9CQ56 Vip-201ENSMUST00000019906 1530 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
Use1Q9CQ56 Gm18537-202ENSMUST00000206215 1503 ntBASIC6.79□□□□□ -1.32
Use1Q9CQ56 5430427O19Rik-201ENSMUST00000113976 3754 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
Use1Q9CQ56 Cd36-204ENSMUST00000170051 3399 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
Use1Q9CQ56 Gm20075-201ENSMUST00000220449 2161 ntAPPRIS P1 BASIC6.79□□□□□ -1.32
Use1Q9CQ56 Gbp3-202ENSMUST00000106221 2682 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
Use1Q9CQ56 Olfr1215-202ENSMUST00000214809 2683 ntAPPRIS P1 TSL 5 BASIC6.79□□□□□ -1.32
Use1Q9CQ56 Impg2-204ENSMUST00000160116 3992 ntAPPRIS ALT2 TSL 1 (best) BASIC6.79□□□□□ -1.32
Use1Q9CQ56 Gm13102-202ENSMUST00000097800 2293 ntAPPRIS ALT2 TSL 5 BASIC6.79□□□□□ -1.32
Retrieved 100 of 76,532 protein–RNA pairs in 81.3 ms