Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 Cbfa2t3-203ENSMUST00000127984 7645 ntAPPRIS P3 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cux1P53564 Nr1h5-203ENSMUST00000196983 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cux1P53564 4921511C10Rik-201ENSMUST00000200412 1463 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Cux1P53564 2610203C20Rik-204ENSMUST00000181214 3525 ntTSL 5 BASIC11.01□□□□□ -0.65
Cux1P53564 AC158605.4-201ENSMUST00000219013 3361 ntBASIC11.01□□□□□ -0.65
Cux1P53564 Mpdz-216ENSMUST00000220807 6295 ntAPPRIS ALT2 TSL 5 BASIC11.01□□□□□ -0.65
Cux1P53564 Rnase6-202ENSMUST00000226194 2452 ntAPPRIS P1 BASIC11.01□□□□□ -0.65
Cux1P53564 Mcm9-203ENSMUST00000219547 3168 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Cux1P53564 Pkd1l3-201ENSMUST00000057344 6456 ntAPPRIS P3 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cux1P53564 Vmn2r-ps159-201ENSMUST00000074107 2716 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Cux1P53564 Gm13749-201ENSMUST00000133244 1432 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Cux1P53564 Vmn1r59-201ENSMUST00000074132 1439 ntAPPRIS P1 BASIC11.01□□□□□ -0.65
Cux1P53564 Gm12886-201ENSMUST00000106266 1149 ntAPPRIS P1 TSL 5 BASIC11.01□□□□□ -0.65
Cux1P53564 Cd209d-201ENSMUST00000011445 919 ntAPPRIS P2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cux1P53564 Gm13357-201ENSMUST00000120528 537 ntBASIC11.01□□□□□ -0.65
Cux1P53564 Gm9285-201ENSMUST00000177691 697 ntBASIC11.01□□□□□ -0.65
Cux1P53564 Rian-215ENSMUST00000183180 633 ntTSL 5 BASIC11.01□□□□□ -0.65
Cux1P53564 Gm19087-201ENSMUST00000191430 946 ntBASIC11.01□□□□□ -0.65
Cux1P53564 Gm43762-201ENSMUST00000201521 295 ntBASIC11.01□□□□□ -0.65
Cux1P53564 Gm43867-201ENSMUST00000203860 525 ntBASIC11.01□□□□□ -0.65
Cux1P53564 4930513N20Rik-201ENSMUST00000207466 1265 ntBASIC11.01□□□□□ -0.65
Cux1P53564 Gm45626-201ENSMUST00000210093 361 ntBASIC11.01□□□□□ -0.65
Cux1P53564 Gm3678-201ENSMUST00000218888 492 ntBASIC11.01□□□□□ -0.65
Cux1P53564 Gm18620-201ENSMUST00000222295 324 ntBASIC11.01□□□□□ -0.65
Cux1P53564 CT009711.2-201ENSMUST00000225352 934 ntBASIC11.01□□□□□ -0.65
Cux1P53564 AC131029.2-201ENSMUST00000226696 628 ntBASIC11.01□□□□□ -0.65
Cux1P53564 Defb15-201ENSMUST00000062586 345 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cux1P53564 Gm28370-201ENSMUST00000185303 3375 ntTSL 5 BASIC11.01□□□□□ -0.65
Cux1P53564 Ighd-202ENSMUST00000194162 1806 ntAPPRIS P5 BASIC11.01□□□□□ -0.65
Cux1P53564 Mrpl19-201ENSMUST00000032124 5000 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cux1P53564 Wdhd1-204ENSMUST00000187531 4260 ntAPPRIS P5 TSL 5 BASIC11.01□□□□□ -0.65
Cux1P53564 Vmn2r4-202ENSMUST00000175724 2742 ntAPPRIS ALT2 TSL 5 BASIC11.01□□□□□ -0.65
Cux1P53564 Vmn2r6-202ENSMUST00000176481 2742 ntAPPRIS ALT2 TSL 5 BASIC11.01□□□□□ -0.65
Cux1P53564 Gm28403-201ENSMUST00000188743 2710 ntTSL 1 (best) BASIC11.01□□□□□ -0.65
Cux1P53564 Mbd3l2-202ENSMUST00000213777 2116 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cux1P53564 Hormad2-203ENSMUST00000109949 1343 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cux1P53564 Apbb1ip-201ENSMUST00000014290 2773 ntAPPRIS P1 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cux1P53564 Aff1-202ENSMUST00000054979 8323 ntAPPRIS ALT2 TSL 1 (best) BASIC11.01□□□□□ -0.65
Cux1P53564 Cntnap4-202ENSMUST00000118171 4860 ntAPPRIS ALT1 TSL 5 BASIC11.01□□□□□ -0.65
Cux1P53564 Zc4h2-202ENSMUST00000119640 2075 ntTSL 1 (best) BASIC11□□□□□ -0.65
Cux1P53564 Pcdh15-225ENSMUST00000149977 5843 ntAPPRIS ALT2 TSL 5 BASIC11□□□□□ -0.65
Cux1P53564 AC171003.1-201ENSMUST00000221667 1665 ntBASIC11□□□□□ -0.65
Cux1P53564 AC155234.1-201ENSMUST00000225610 2823 ntBASIC11□□□□□ -0.65
Cux1P53564 Gm25724-201ENSMUST00000104531 117 ntBASIC11□□□□□ -0.65
Cux1P53564 Gm13754-201ENSMUST00000120486 998 ntBASIC11□□□□□ -0.65
Cux1P53564 Gm14272-201ENSMUST00000133525 484 ntTSL 3 BASIC11□□□□□ -0.65
Cux1P53564 1700047F07Rik-201ENSMUST00000140321 543 ntTSL 1 (best) BASIC11□□□□□ -0.65
Cux1P53564 Obox1-202ENSMUST00000172463 783 ntAPPRIS P1 TSL 3 BASIC11□□□□□ -0.65
Cux1P53564 Gm10428-201ENSMUST00000178750 399 ntAPPRIS P1 BASIC11□□□□□ -0.65
Cux1P53564 1700020G17Rik-203ENSMUST00000191286 723 ntTSL 1 (best) BASIC11□□□□□ -0.65
Cux1P53564 Gm37177-201ENSMUST00000193768 417 ntBASIC11□□□□□ -0.65
Cux1P53564 Gm44471-201ENSMUST00000197963 100 ntBASIC11□□□□□ -0.65
Cux1P53564 Gm8190-201ENSMUST00000199603 586 ntBASIC11□□□□□ -0.65
Cux1P53564 Gm9367-201ENSMUST00000205703 546 ntBASIC11□□□□□ -0.65
Cux1P53564 AL591207.2-201ENSMUST00000222991 337 ntBASIC11□□□□□ -0.65
Cux1P53564 Olfr1457-201ENSMUST00000075170 954 ntAPPRIS P1 BASIC11□□□□□ -0.65
Cux1P53564 Mir425-201ENSMUST00000083645 85 ntBASIC11□□□□□ -0.65
Cux1P53564 Chil3-201ENSMUST00000063062 1539 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Cux1P53564 Pnliprp1-201ENSMUST00000048644 1619 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Cux1P53564 Epha7-202ENSMUST00000080934 2880 ntTSL 1 (best) BASIC11□□□□□ -0.65
Cux1P53564 AC154597.1-201ENSMUST00000224095 2713 ntBASIC11□□□□□ -0.65
Cux1P53564 Pfkfb2-211ENSMUST00000189534 2454 ntAPPRIS ALT2 TSL 1 (best) BASIC11□□□□□ -0.65
Cux1P53564 Hecw2-201ENSMUST00000087659 11171 ntAPPRIS P1 TSL 5 BASIC11□□□□□ -0.65
Cux1P53564 Kif1a-204ENSMUST00000171796 8206 ntTSL 1 (best) BASIC11□□□□□ -0.65
Cux1P53564 Garnl3-201ENSMUST00000049618 3678 ntAPPRIS ALT2 TSL 1 (best) BASIC11□□□□□ -0.65
Cux1P53564 Map1a-202ENSMUST00000110639 10145 ntAPPRIS ALT2 TSL 5 BASIC11□□□□□ -0.65
Cux1P53564 AC166574.1-201ENSMUST00000226916 1309 ntBASIC11□□□□□ -0.65
Cux1P53564 Syt11-201ENSMUST00000090945 4567 ntAPPRIS P1 TSL 1 (best) BASIC11□□□□□ -0.65
Cux1P53564 Mep1a-202ENSMUST00000117137 2967 ntAPPRIS ALT2 TSL 1 (best) BASIC11□□□□□ -0.65
Cux1P53564 Gm26846-201ENSMUST00000181865 4869 ntTSL 5 BASIC11□□□□□ -0.65
Cux1P53564 AC133207.1-201ENSMUST00000218960 1431 ntTSL 5 BASIC11□□□□□ -0.65
Cux1P53564 Rgs7-201ENSMUST00000027812 1418 ntAPPRIS P3 TSL 5 BASIC11□□□□□ -0.65
Cux1P53564 Adgrl2-213ENSMUST00000199059 4637 ntTSL 5 BASIC11□□□□□ -0.65
Cux1P53564 Gm3138-201ENSMUST00000165431 1760 ntAPPRIS P1 TSL 5 BASIC11□□□□□ -0.65
Cux1P53564 Zp2-205ENSMUST00000208874 2233 ntAPPRIS ALT2 TSL 1 (best) BASIC11□□□□□ -0.65
Cux1P53564 Sptbn1-201ENSMUST00000006629 8461 ntAPPRIS P1 TSL 5 BASIC10.99□□□□□ -0.65
Cux1P53564 Gm15750-201ENSMUST00000120970 616 ntBASIC10.99□□□□□ -0.65
Cux1P53564 Gm12369-201ENSMUST00000121343 942 ntBASIC10.99□□□□□ -0.65
Cux1P53564 Gm16347-201ENSMUST00000131707 622 ntTSL 2 BASIC10.99□□□□□ -0.65
Cux1P53564 Gm11335-201ENSMUST00000148743 1080 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
Cux1P53564 Zfp572-202ENSMUST00000184208 1078 ntBASIC10.99□□□□□ -0.65
Cux1P53564 Gm29099-201ENSMUST00000187370 760 ntTSL 5 BASIC10.99□□□□□ -0.65
Cux1P53564 Gm37322-201ENSMUST00000193409 337 ntBASIC10.99□□□□□ -0.65
Cux1P53564 Gm43538-201ENSMUST00000200416 849 ntTSL 3 BASIC10.99□□□□□ -0.65
Cux1P53564 Gm42584-201ENSMUST00000201404 220 ntBASIC10.99□□□□□ -0.65
Cux1P53564 Il20-201ENSMUST00000027673 1186 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Cux1P53564 Mab21l3-201ENSMUST00000061831 3558 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Cux1P53564 Nav2-216ENSMUST00000184945 10665 ntAPPRIS P4 TSL 5 BASIC10.99□□□□□ -0.65
Cux1P53564 Itgam-202ENSMUST00000106240 3325 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
Cux1P53564 Agbl1-202ENSMUST00000107442 2617 ntAPPRIS ALT2 TSL 2 BASIC10.99□□□□□ -0.65
Cux1P53564 Gm33968-201ENSMUST00000211015 1562 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
Cux1P53564 Eif2ak4-204ENSMUST00000110870 5116 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
Cux1P53564 AC153955.4-201ENSMUST00000217069 2752 ntBASIC10.99□□□□□ -0.65
Cux1P53564 AC129308.1-201ENSMUST00000223800 2309 ntBASIC10.99□□□□□ -0.65
Cux1P53564 Abca4-201ENSMUST00000013995 7263 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Cux1P53564 Celsr3-201ENSMUST00000024238 11547 ntAPPRIS P2 TSL 1 (best) BASIC10.99□□□□□ -0.65
Cux1P53564 Exoc2-202ENSMUST00000102946 4375 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Cux1P53564 Prpf4-201ENSMUST00000084524 5223 ntAPPRIS P1 TSL 1 (best) BASIC10.99□□□□□ -0.65
Cux1P53564 Gm26849-201ENSMUST00000180561 1842 ntTSL 1 (best) BASIC10.99□□□□□ -0.65
Cux1P53564 Gm9268-202ENSMUST00000173815 2565 ntAPPRIS P2 TSL 5 BASIC10.99□□□□□ -0.65
Retrieved 100 of 76,532 protein–RNA pairs in 65.9 ms