Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Klra7-203ENSMUST00000088011 921 ntAPPRIS P3 TSL 1 (best) BASIC6.68□□□□□ -1.34
Col8a1Q00780 Anapc15-ps-201ENSMUST00000099328 426 ntAPPRIS ALT2 TSL 5 BASIC6.68□□□□□ -1.34
Col8a1Q00780 Hdhd2-208ENSMUST00000148955 3069 ntAPPRIS P1 TSL 5 BASIC6.68□□□□□ -1.34
Col8a1Q00780 Ints14-202ENSMUST00000170517 2820 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
Col8a1Q00780 Siae-202ENSMUST00000213126 2306 ntAPPRIS ALT2 TSL 5 BASIC6.68□□□□□ -1.34
Col8a1Q00780 Cass4-202ENSMUST00000103073 3600 ntAPPRIS ALT2 TSL 1 (best) BASIC6.68□□□□□ -1.34
Col8a1Q00780 Mybpc2-201ENSMUST00000165208 3611 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
Col8a1Q00780 Usp54-202ENSMUST00000035340 6495 ntAPPRIS P1 TSL 5 BASIC6.68□□□□□ -1.34
Col8a1Q00780 Pls3-204ENSMUST00000114059 3149 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
Col8a1Q00780 Ripor2-203ENSMUST00000091694 3142 ntAPPRIS P3 TSL 1 (best) BASIC6.68□□□□□ -1.34
Col8a1Q00780 Nsun2-201ENSMUST00000022087 4164 ntAPPRIS ALT2 TSL 1 (best) BASIC6.68□□□□□ -1.34
Col8a1Q00780 Sox6-212ENSMUST00000206369 2863 ntAPPRIS ALT2 TSL 5 BASIC6.68□□□□□ -1.34
Col8a1Q00780 Olfr92-203ENSMUST00000216341 2115 ntAPPRIS P1 TSL 5 BASIC6.68□□□□□ -1.34
Col8a1Q00780 AC122346.1-202ENSMUST00000225586 2116 ntBASIC6.68□□□□□ -1.34
Col8a1Q00780 Ptpn3-201ENSMUST00000075637 6369 ntAPPRIS P1 TSL 5 BASIC6.68□□□□□ -1.34
Col8a1Q00780 2610020C07Rik-201ENSMUST00000181526 2925 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
Col8a1Q00780 Lemd1-205ENSMUST00000188169 2904 ntAPPRIS ALT2 TSL 1 (best) BASIC6.68□□□□□ -1.34
Col8a1Q00780 Olfr616-202ENSMUST00000214806 1641 ntAPPRIS P1 TSL 5 BASIC6.68□□□□□ -1.34
Col8a1Q00780 Olfr616-203ENSMUST00000217293 1627 ntAPPRIS P1 TSL 5 BASIC6.68□□□□□ -1.34
Col8a1Q00780 Erc1-210ENSMUST00000184864 5428 ntAPPRIS ALT1 TSL 5 BASIC6.68□□□□□ -1.34
Col8a1Q00780 Mybbp1a-201ENSMUST00000045633 4358 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
Col8a1Q00780 Gm21761-202ENSMUST00000187530 1374 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
Col8a1Q00780 Gm6554-201ENSMUST00000220592 1912 ntBASIC6.68□□□□□ -1.34
Col8a1Q00780 Rdh12-201ENSMUST00000021548 1678 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
Col8a1Q00780 Kyat3-201ENSMUST00000044392 4206 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
Col8a1Q00780 Vmn2r55-201ENSMUST00000167771 1407 ntTSL 5 BASIC6.67□□□□□ -1.34
Col8a1Q00780 Slfn4-202ENSMUST00000167596 3703 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
Col8a1Q00780 Gm9125-202ENSMUST00000180746 2325 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
Col8a1Q00780 Gm9117-202ENSMUST00000193529 2325 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
Col8a1Q00780 Zfp40-201ENSMUST00000037057 4103 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
Col8a1Q00780 Gpr87-203ENSMUST00000200095 1499 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
Col8a1Q00780 EU599041-203ENSMUST00000205748 1492 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
Col8a1Q00780 Stmn2-201ENSMUST00000029002 2073 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
Col8a1Q00780 Trmt10b-201ENSMUST00000044673 2064 ntAPPRIS P2 TSL 1 (best) BASIC6.67□□□□□ -1.34
Col8a1Q00780 Gsdmc-202ENSMUST00000173503 2375 ntAPPRIS ALT2 TSL 5 BASIC6.67□□□□□ -1.34
Col8a1Q00780 Ttc39d-202ENSMUST00000134652 2438 ntAPPRIS P1 TSL 3 BASIC6.67□□□□□ -1.34
Col8a1Q00780 Gm18697-201ENSMUST00000191179 2126 ntBASIC6.67□□□□□ -1.34
Col8a1Q00780 1110015O18Rik-202ENSMUST00000183944 1533 ntTSL 3 BASIC6.67□□□□□ -1.34
Col8a1Q00780 Trpv1-202ENSMUST00000102526 3361 ntAPPRIS P2 TSL 1 (best) BASIC6.67□□□□□ -1.34
Col8a1Q00780 2900018N21Rik-201ENSMUST00000195805 1580 ntBASIC6.67□□□□□ -1.34
Col8a1Q00780 Lpin1-207ENSMUST00000222989 4103 ntAPPRIS ALT2 TSL 1 (best) BASIC6.67□□□□□ -1.34
Col8a1Q00780 Gm10376-201ENSMUST00000100694 555 ntAPPRIS ALT2 TSL 5 BASIC6.67□□□□□ -1.34
Col8a1Q00780 Agxt2-203ENSMUST00000110541 1222 ntTSL 2 BASIC6.67□□□□□ -1.34
Col8a1Q00780 Gm15778-201ENSMUST00000118469 608 ntBASIC6.67□□□□□ -1.34
Col8a1Q00780 Gm13676-201ENSMUST00000122185 591 ntBASIC6.67□□□□□ -1.34
Col8a1Q00780 Gm11349-201ENSMUST00000122209 1116 ntBASIC6.67□□□□□ -1.34
Col8a1Q00780 Gm24382-201ENSMUST00000122698 107 ntBASIC6.67□□□□□ -1.34
Col8a1Q00780 Gm15122-201ENSMUST00000135434 462 ntTSL 2 BASIC6.67□□□□□ -1.34
Col8a1Q00780 Gm13330-201ENSMUST00000136400 388 ntTSL 5 BASIC6.67□□□□□ -1.34
Col8a1Q00780 Gm7546-201ENSMUST00000146119 966 ntTSL 3 BASIC6.67□□□□□ -1.34
Col8a1Q00780 Gm15902-201ENSMUST00000146949 469 ntTSL 3 BASIC6.67□□□□□ -1.34
Col8a1Q00780 Gm15787-207ENSMUST00000152014 885 ntTSL 2 BASIC6.67□□□□□ -1.34
Col8a1Q00780 Cfap61-212ENSMUST00000152515 640 ntTSL 3 BASIC6.67□□□□□ -1.34
Col8a1Q00780 Gm26069-201ENSMUST00000157497 277 ntBASIC6.67□□□□□ -1.34
Col8a1Q00780 Gm22687-201ENSMUST00000158301 105 ntBASIC6.67□□□□□ -1.34
Col8a1Q00780 Gm24057-201ENSMUST00000158616 302 ntBASIC6.67□□□□□ -1.34
Col8a1Q00780 Gm3008-201ENSMUST00000160566 571 ntBASIC6.67□□□□□ -1.34
Col8a1Q00780 Atxn3-205ENSMUST00000161011 1000 ntAPPRIS ALT2 TSL 1 (best) BASIC6.67□□□□□ -1.34
Col8a1Q00780 Vmn1r116-201ENSMUST00000164288 924 ntAPPRIS P1 BASIC6.67□□□□□ -1.34
Col8a1Q00780 Gm8340-201ENSMUST00000165508 1191 ntBASIC6.67□□□□□ -1.34
Col8a1Q00780 Gm7352-201ENSMUST00000167577 1192 ntBASIC6.67□□□□□ -1.34
Col8a1Q00780 Vmn1r152-201ENSMUST00000168326 924 ntAPPRIS P1 BASIC6.67□□□□□ -1.34
Col8a1Q00780 Vmn1r95-201ENSMUST00000168984 924 ntAPPRIS P1 BASIC6.67□□□□□ -1.34
Col8a1Q00780 Vmn1r104-201ENSMUST00000169689 924 ntAPPRIS P1 BASIC6.67□□□□□ -1.34
Col8a1Q00780 Vmn1r143-201ENSMUST00000171622 924 ntAPPRIS P1 BASIC6.67□□□□□ -1.34
Col8a1Q00780 Srsx-201ENSMUST00000171714 1083 ntAPPRIS P1 BASIC6.67□□□□□ -1.34
Col8a1Q00780 Gm24155-201ENSMUST00000175259 110 ntBASIC6.67□□□□□ -1.34
Col8a1Q00780 Vmn1r-ps151-201ENSMUST00000176956 982 ntBASIC6.67□□□□□ -1.34
Col8a1Q00780 Gm5039-201ENSMUST00000177747 435 ntAPPRIS P1 BASIC6.67□□□□□ -1.34
Col8a1Q00780 Gm1553-201ENSMUST00000177934 658 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
Col8a1Q00780 Gm8332-201ENSMUST00000179468 435 ntAPPRIS P1 BASIC6.67□□□□□ -1.34
Col8a1Q00780 Gm2035-201ENSMUST00000180053 435 ntAPPRIS P1 BASIC6.67□□□□□ -1.34
Col8a1Q00780 Gm26901-201ENSMUST00000181554 1193 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
Col8a1Q00780 Gm21294-201ENSMUST00000186443 934 ntAPPRIS P1 TSL 5 BASIC6.67□□□□□ -1.34
Col8a1Q00780 1700054A03Rik-201ENSMUST00000187368 780 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
Col8a1Q00780 Gm29383-201ENSMUST00000188284 480 ntBASIC6.67□□□□□ -1.34
Col8a1Q00780 Gm6119-201ENSMUST00000193443 1206 ntBASIC6.67□□□□□ -1.34
Col8a1Q00780 Gm37910-201ENSMUST00000194770 217 ntTSL 5 BASIC6.67□□□□□ -1.34
Col8a1Q00780 Gtpbp4-ps7-201ENSMUST00000197059 297 ntBASIC6.67□□□□□ -1.34
Col8a1Q00780 Gm42963-201ENSMUST00000202943 1217 ntBASIC6.67□□□□□ -1.34
Col8a1Q00780 Gm43992-201ENSMUST00000204358 197 ntBASIC6.67□□□□□ -1.34
Col8a1Q00780 Oaz3-207ENSMUST00000204913 689 ntTSL 5 BASIC6.67□□□□□ -1.34
Col8a1Q00780 Gm44590-201ENSMUST00000206161 391 ntBASIC6.67□□□□□ -1.34
Col8a1Q00780 Mypopos-203ENSMUST00000206304 441 ntTSL 3 BASIC6.67□□□□□ -1.34
Col8a1Q00780 Gm4290-201ENSMUST00000206897 814 ntBASIC6.67□□□□□ -1.34
Col8a1Q00780 4930483O08Rik-201ENSMUST00000209850 1030 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
Col8a1Q00780 Gm45490-201ENSMUST00000210084 742 ntTSL 3 BASIC6.67□□□□□ -1.34
Col8a1Q00780 Gm46136-201ENSMUST00000214730 565 ntBASIC6.67□□□□□ -1.34
Col8a1Q00780 Gm30933-201ENSMUST00000217174 381 ntTSL 2 BASIC6.67□□□□□ -1.34
Col8a1Q00780 Gm31763-203ENSMUST00000219739 1025 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
Col8a1Q00780 AC116465.1-201ENSMUST00000220324 235 ntBASIC6.67□□□□□ -1.34
Col8a1Q00780 Gm21936-201ENSMUST00000221442 435 ntAPPRIS P1 BASIC6.67□□□□□ -1.34
Col8a1Q00780 1700024I08Rik-202ENSMUST00000222074 407 ntTSL 5 BASIC6.67□□□□□ -1.34
Col8a1Q00780 AC166830.1-201ENSMUST00000224201 533 ntBASIC6.67□□□□□ -1.34
Col8a1Q00780 AC117656.3-205ENSMUST00000224606 1205 ntBASIC6.67□□□□□ -1.34
Col8a1Q00780 AC118249.1-201ENSMUST00000224822 608 ntBASIC6.67□□□□□ -1.34
Col8a1Q00780 AC126805.1-201ENSMUST00000225142 262 ntBASIC6.67□□□□□ -1.34
Col8a1Q00780 Klre1-201ENSMUST00000053708 1294 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
Col8a1Q00780 Slurp2-201ENSMUST00000057932 545 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
Col8a1Q00780 Vmn1r219-201ENSMUST00000076180 939 ntAPPRIS P1 BASIC6.67□□□□□ -1.34
Retrieved 100 of 76,532 protein–RNA pairs in 83.1 ms