Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 1700084J12Rik-201ENSMUST00000079057 734 ntBASIC11.13□□□□□ -0.63
Cux1P53564 Mir106b-201ENSMUST00000083580 82 ntBASIC11.13□□□□□ -0.63
Cux1P53564 Gm37373-201ENSMUST00000194005 2812 ntBASIC11.13□□□□□ -0.63
Cux1P53564 Myot-202ENSMUST00000115498 2087 ntAPPRIS P1 TSL 5 BASIC11.13□□□□□ -0.63
Cux1P53564 Cmah-207ENSMUST00000224657 3124 ntAPPRIS P1 BASIC11.13□□□□□ -0.63
Cux1P53564 Tmem106b-201ENSMUST00000031556 6002 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Cux1P53564 Xrn2-201ENSMUST00000028921 3434 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Cux1P53564 Setd7-201ENSMUST00000037141 7411 ntAPPRIS P1 TSL 1 (best) BASIC11.13□□□□□ -0.63
Cux1P53564 Gm28704-201ENSMUST00000186589 2169 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Cux1P53564 Gm29636-201ENSMUST00000188149 2169 ntTSL 1 (best) BASIC11.13□□□□□ -0.63
Cux1P53564 Wipf3-205ENSMUST00000163746 4102 ntAPPRIS ALT2 TSL 5 BASIC11.13□□□□□ -0.63
Cux1P53564 Mccc1os-201ENSMUST00000124469 3353 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Cux1P53564 Olfr193-203ENSMUST00000208455 2855 ntAPPRIS P1 TSL 3 BASIC11.12□□□□□ -0.63
Cux1P53564 Stt3a-201ENSMUST00000120381 5867 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Cux1P53564 Copg1-202ENSMUST00000113607 4140 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Cux1P53564 Apod-203ENSMUST00000130560 2074 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Cux1P53564 Gm18305-201ENSMUST00000216532 2128 ntBASIC11.12□□□□□ -0.63
Cux1P53564 Tmem236-201ENSMUST00000077517 3659 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Cux1P53564 1700024B05Rik-201ENSMUST00000064162 1576 ntAPPRIS P5 TSL 1 (best) BASIC11.12□□□□□ -0.63
Cux1P53564 Csf3r-201ENSMUST00000030673 3160 ntAPPRIS P1 TSL 5 BASIC11.12□□□□□ -0.63
Cux1P53564 Gm15422-201ENSMUST00000117453 541 ntBASIC11.12□□□□□ -0.63
Cux1P53564 Gm15311-201ENSMUST00000119682 282 ntBASIC11.12□□□□□ -0.63
Cux1P53564 Gm15305-201ENSMUST00000120354 288 ntBASIC11.12□□□□□ -0.63
Cux1P53564 Gm12920-201ENSMUST00000121818 1186 ntBASIC11.12□□□□□ -0.63
Cux1P53564 Gm14251-201ENSMUST00000122133 279 ntBASIC11.12□□□□□ -0.63
Cux1P53564 Gm14092-201ENSMUST00000136794 617 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Cux1P53564 Airn-202ENSMUST00000159731 435 ntTSL 3 BASIC11.12□□□□□ -0.63
Cux1P53564 Gm4613-201ENSMUST00000165488 276 ntBASIC11.12□□□□□ -0.63
Cux1P53564 Gm20713-201ENSMUST00000176344 435 ntTSL 5 BASIC11.12□□□□□ -0.63
Cux1P53564 Rpp14-202ENSMUST00000180369 477 ntAPPRIS P1 BASIC11.12□□□□□ -0.63
Cux1P53564 Gm8883-201ENSMUST00000187594 454 ntTSL 3 BASIC11.12□□□□□ -0.63
Cux1P53564 1810049I09Rik-202ENSMUST00000206760 556 ntBASIC11.12□□□□□ -0.63
Cux1P53564 Gm45267-201ENSMUST00000211028 522 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Cux1P53564 AL671874.1-201ENSMUST00000223746 1123 ntBASIC11.12□□□□□ -0.63
Cux1P53564 CT009713.5-201ENSMUST00000224508 909 ntBASIC11.12□□□□□ -0.63
Cux1P53564 CT025579.4-201ENSMUST00000224598 627 ntBASIC11.12□□□□□ -0.63
Cux1P53564 Vmn1r53-201ENSMUST00000076086 1122 ntAPPRIS P1 BASIC11.12□□□□□ -0.63
Cux1P53564 Olfr539-201ENSMUST00000078967 960 ntAPPRIS P2 BASIC11.12□□□□□ -0.63
Cux1P53564 Adgrl3-208ENSMUST00000118442 5101 ntTSL 5 BASIC11.12□□□□□ -0.63
Cux1P53564 Gm43429-201ENSMUST00000197889 2251 ntBASIC11.12□□□□□ -0.63
Cux1P53564 AC132474.1-201ENSMUST00000214407 3686 ntBASIC11.12□□□□□ -0.63
Cux1P53564 Trim60-201ENSMUST00000048565 2670 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Cux1P53564 Smurf2-206ENSMUST00000167787 2358 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Cux1P53564 Olfr701-201ENSMUST00000075414 3063 ntAPPRIS P1 TSL 1 (best) BASIC11.12□□□□□ -0.63
Cux1P53564 Ptbp2-207ENSMUST00000197464 1742 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Cux1P53564 Gm5118-201ENSMUST00000184692 2203 ntTSL 1 (best) BASIC11.12□□□□□ -0.63
Cux1P53564 Ar-201ENSMUST00000052837 10048 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Cux1P53564 Dusp3-201ENSMUST00000003612 4212 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Cux1P53564 Trappc13-201ENSMUST00000022224 2342 ntAPPRIS P4 TSL 1 (best) BASIC11.11□□□□□ -0.63
Cux1P53564 Ank3-203ENSMUST00000092431 5823 ntAPPRIS ALT2 TSL 5 BASIC11.11□□□□□ -0.63
Cux1P53564 Rrp7a-201ENSMUST00000018184 4363 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Cux1P53564 Arid5b-204ENSMUST00000219238 7581 ntAPPRIS P2 TSL 1 (best) BASIC11.11□□□□□ -0.63
Cux1P53564 Gm23979-201ENSMUST00000104071 128 ntBASIC11.11□□□□□ -0.63
Cux1P53564 Tdpx-ps1-201ENSMUST00000117372 597 ntBASIC11.11□□□□□ -0.63
Cux1P53564 Gm13224-201ENSMUST00000119586 94 ntBASIC11.11□□□□□ -0.63
Cux1P53564 Gm11963-201ENSMUST00000149826 500 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Cux1P53564 Pde1c-207ENSMUST00000168944 2126 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Cux1P53564 Gm28929-201ENSMUST00000185330 1193 ntBASIC11.11□□□□□ -0.63
Cux1P53564 Gm5711-201ENSMUST00000197896 421 ntBASIC11.11□□□□□ -0.63
Cux1P53564 4930567H12Rik-201ENSMUST00000212260 955 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Cux1P53564 Olfr342-201ENSMUST00000074192 1054 ntAPPRIS P1 BASIC11.11□□□□□ -0.63
Cux1P53564 Rpl29-202ENSMUST00000098994 583 ntAPPRIS P1 TSL 2 BASIC11.11□□□□□ -0.63
Cux1P53564 Vmn1r50-203ENSMUST00000226577 2240 ntAPPRIS P1 BASIC11.11□□□□□ -0.63
Cux1P53564 Lhx4-201ENSMUST00000027740 5514 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Cux1P53564 Gm45807-201ENSMUST00000209142 2874 ntBASIC11.11□□□□□ -0.63
Cux1P53564 Ypel2-201ENSMUST00000018571 4847 ntAPPRIS P1 TSL 1 (best) BASIC11.11□□□□□ -0.63
Cux1P53564 Nav2-202ENSMUST00000064395 11317 ntAPPRIS ALT2 TSL 5 BASIC11.11□□□□□ -0.63
Cux1P53564 AC163354.1-201ENSMUST00000220620 1630 ntTSL 1 (best) BASIC11.11□□□□□ -0.63
Cux1P53564 Gm11733-201ENSMUST00000092394 2311 ntAPPRIS P1 TSL 2 BASIC11.1□□□□□ -0.63
Cux1P53564 2010111I01Rik-202ENSMUST00000091560 3509 ntAPPRIS P2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Cux1P53564 Gdpgp1-201ENSMUST00000062915 4189 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Cux1P53564 Synpo2-207ENSMUST00000198584 9203 ntAPPRIS ALT2 TSL 5 BASIC11.1□□□□□ -0.63
Cux1P53564 Eri2-203ENSMUST00000106523 973 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Cux1P53564 Gm12710-201ENSMUST00000119011 216 ntBASIC11.1□□□□□ -0.63
Cux1P53564 Gm11370-201ENSMUST00000120583 260 ntBASIC11.1□□□□□ -0.63
Cux1P53564 Gm12440-201ENSMUST00000155224 1070 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Cux1P53564 Gm11840-201ENSMUST00000156947 696 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Cux1P53564 2810442N19Rik-202ENSMUST00000161583 919 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Cux1P53564 Gm3344-201ENSMUST00000169610 603 ntBASIC11.1□□□□□ -0.63
Cux1P53564 Gm32585-201ENSMUST00000198586 764 ntTSL 3 BASIC11.1□□□□□ -0.63
Cux1P53564 Gm31036-201ENSMUST00000212925 521 ntTSL 3 BASIC11.1□□□□□ -0.63
Cux1P53564 Gm34424-201ENSMUST00000213400 782 ntBASIC11.1□□□□□ -0.63
Cux1P53564 Eri2-202ENSMUST00000063902 1241 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Cux1P53564 Gm16020-201ENSMUST00000084281 210 ntBASIC11.1□□□□□ -0.63
Cux1P53564 Zswim9-202ENSMUST00000119139 3986 ntAPPRIS P5 TSL 1 (best) BASIC11.1□□□□□ -0.63
Cux1P53564 Cntn5-205ENSMUST00000179049 2682 ntTSL 5 BASIC11.1□□□□□ -0.63
Cux1P53564 Wdr44-202ENSMUST00000101670 4002 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Cux1P53564 Pramel-201ENSMUST00000118979 1383 ntBASIC11.1□□□□□ -0.63
Cux1P53564 Olfr338-203ENSMUST00000217511 5724 ntAPPRIS P1 TSL 5 BASIC11.1□□□□□ -0.63
Cux1P53564 Tarm1-202ENSMUST00000203020 1487 ntAPPRIS ALT2 TSL 1 (best) BASIC11.1□□□□□ -0.63
Cux1P53564 Nsd3-201ENSMUST00000084026 9945 ntAPPRIS P2 TSL 2 BASIC11.1□□□□□ -0.63
Cux1P53564 8030451A03Rik-203ENSMUST00000141428 2618 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Cux1P53564 Gm42820-201ENSMUST00000200084 3063 ntBASIC11.1□□□□□ -0.63
Cux1P53564 Gcm2-201ENSMUST00000021791 3073 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Cux1P53564 Elf5-201ENSMUST00000028609 2222 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Cux1P53564 Zfp874a-201ENSMUST00000057241 2210 ntTSL 1 (best) BASIC11.1□□□□□ -0.63
Cux1P53564 Vgll1-201ENSMUST00000033465 2281 ntAPPRIS P1 TSL 1 (best) BASIC11.1□□□□□ -0.63
Cux1P53564 Gm14741-201ENSMUST00000120777 1009 ntBASIC11.09□□□□□ -0.63
Cux1P53564 Gm11341-201ENSMUST00000122316 447 ntBASIC11.09□□□□□ -0.63
Cux1P53564 Gm15242-201ENSMUST00000122459 283 ntBASIC11.09□□□□□ -0.63
Retrieved 100 of 76,532 protein–RNA pairs in 93.6 ms