Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Nxt2-204ENSMUST00000112916 2532 ntTSL 3 BASIC5.86□□□□□ -1.47
Sdc1P18828 2610044O15Rik8-202ENSMUST00000186619 2337 ntAPPRIS P1 TSL 2 BASIC5.86□□□□□ -1.47
Sdc1P18828 Gm5600-202ENSMUST00000211589 2331 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
Sdc1P18828 Vmn1r35-203ENSMUST00000227354 2319 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
Sdc1P18828 Spam1-202ENSMUST00000202331 2100 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
Sdc1P18828 Hapln1-201ENSMUST00000022108 5715 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
Sdc1P18828 Meis1-208ENSMUST00000177417 5308 ntTSL 5 BASIC5.86□□□□□ -1.47
Sdc1P18828 Gm10555-201ENSMUST00000193178 1791 ntBASIC5.86□□□□□ -1.47
Sdc1P18828 Ankrd49-201ENSMUST00000034406 1753 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
Sdc1P18828 Gm16123-201ENSMUST00000118647 1517 ntBASIC5.86□□□□□ -1.47
Sdc1P18828 Alpk2-201ENSMUST00000035548 7249 ntAPPRIS P1 TSL 5 BASIC5.86□□□□□ -1.47
Sdc1P18828 Pramef20-201ENSMUST00000121109 1434 ntAPPRIS P1 TSL 5 BASIC5.86□□□□□ -1.47
Sdc1P18828 Arl5b-201ENSMUST00000017562 6933 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
Sdc1P18828 Sv2b-204ENSMUST00000206344 3910 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
Sdc1P18828 Mir678-201ENSMUST00000102114 84 ntBASIC5.86□□□□□ -1.47
Sdc1P18828 Gm25761-201ENSMUST00000103983 128 ntBASIC5.86□□□□□ -1.47
Sdc1P18828 Gm24257-201ENSMUST00000104472 131 ntBASIC5.86□□□□□ -1.47
Sdc1P18828 Cep112-202ENSMUST00000106715 1161 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
Sdc1P18828 Gm12470-201ENSMUST00000117239 1049 ntBASIC5.86□□□□□ -1.47
Sdc1P18828 Sumo2-203ENSMUST00000117589 987 ntTSL 3 BASIC5.86□□□□□ -1.47
Sdc1P18828 Gm8661-201ENSMUST00000118688 992 ntBASIC5.86□□□□□ -1.47
Sdc1P18828 Gm25319-201ENSMUST00000122552 325 ntBASIC5.86□□□□□ -1.47
Sdc1P18828 Gm14344-201ENSMUST00000139338 580 ntTSL 3 BASIC5.86□□□□□ -1.47
Sdc1P18828 1700026D11Rik-203ENSMUST00000144501 535 ntTSL 3 BASIC5.86□□□□□ -1.47
Sdc1P18828 Fhad1os1-201ENSMUST00000146094 997 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
Sdc1P18828 Sumo2-207ENSMUST00000153892 1051 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
Sdc1P18828 Gm25604-201ENSMUST00000158359 133 ntBASIC5.86□□□□□ -1.47
Sdc1P18828 Gm16333-201ENSMUST00000161416 318 ntTSL 3 BASIC5.86□□□□□ -1.47
Sdc1P18828 Gm17032-201ENSMUST00000164367 338 ntTSL 3 BASIC5.86□□□□□ -1.47
Sdc1P18828 Gm17228-201ENSMUST00000165006 491 ntBASIC5.86□□□□□ -1.47
Sdc1P18828 Gm3275-201ENSMUST00000169145 487 ntBASIC5.86□□□□□ -1.47
Sdc1P18828 Gm24325-201ENSMUST00000175344 74 ntBASIC5.86□□□□□ -1.47
Sdc1P18828 Gm8974-201ENSMUST00000175770 479 ntBASIC5.86□□□□□ -1.47
Sdc1P18828 Uchl1os-202ENSMUST00000177319 505 ntTSL 3 BASIC5.86□□□□□ -1.47
Sdc1P18828 Rbp2-204ENSMUST00000189446 803 ntAPPRIS P1 TSL 3 BASIC5.86□□□□□ -1.47
Sdc1P18828 Gm8883-204ENSMUST00000189680 699 ntTSL 2 BASIC5.86□□□□□ -1.47
Sdc1P18828 C430002N11Rik-204ENSMUST00000190054 443 ntTSL 3 BASIC5.86□□□□□ -1.47
Sdc1P18828 Gm37328-201ENSMUST00000193191 640 ntBASIC5.86□□□□□ -1.47
Sdc1P18828 Gm37450-201ENSMUST00000195218 170 ntBASIC5.86□□□□□ -1.47
Sdc1P18828 Gm6312-201ENSMUST00000204060 1194 ntBASIC5.86□□□□□ -1.47
Sdc1P18828 Gm44861-201ENSMUST00000208325 1220 ntBASIC5.86□□□□□ -1.47
Sdc1P18828 Gm8168-201ENSMUST00000209631 948 ntBASIC5.86□□□□□ -1.47
Sdc1P18828 AC166902.2-202ENSMUST00000213191 1038 ntTSL 5 BASIC5.86□□□□□ -1.47
Sdc1P18828 AC153971.1-201ENSMUST00000215097 3811 ntBASIC5.86□□□□□ -1.47
Sdc1P18828 Gm5119-201ENSMUST00000215858 634 ntBASIC5.86□□□□□ -1.47
Sdc1P18828 AC153937.2-202ENSMUST00000219583 670 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
Sdc1P18828 Gm36172-201ENSMUST00000219852 723 ntTSL 3 BASIC5.86□□□□□ -1.47
Sdc1P18828 Rhno1-207ENSMUST00000223237 1081 ntAPPRIS P1 TSL 2 BASIC5.86□□□□□ -1.47
Sdc1P18828 AC069562.1-201ENSMUST00000224206 434 ntBASIC5.86□□□□□ -1.47
Sdc1P18828 Vmn1r41-202ENSMUST00000226337 888 ntBASIC5.86□□□□□ -1.47
Sdc1P18828 Vmn1r41-203ENSMUST00000226562 1046 ntBASIC5.86□□□□□ -1.47
Sdc1P18828 Pglyrp4-201ENSMUST00000047745 1218 ntAPPRIS P3 TSL 1 (best) BASIC5.86□□□□□ -1.47
Sdc1P18828 Olfr399-201ENSMUST00000059440 1003 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
Sdc1P18828 Chn1-201ENSMUST00000070579 1023 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
Sdc1P18828 Gm6083-201ENSMUST00000075518 357 ntBASIC5.86□□□□□ -1.47
Sdc1P18828 A630095E13Rik-201ENSMUST00000093868 619 ntAPPRIS P2 TSL 1 (best) BASIC5.86□□□□□ -1.47
Sdc1P18828 Wdr66-207ENSMUST00000170536 3679 ntTSL 5 BASIC5.86□□□□□ -1.47
Sdc1P18828 Gm43335-201ENSMUST00000198299 3276 ntBASIC5.86□□□□□ -1.47
Sdc1P18828 Trp63-208ENSMUST00000115310 5366 ntAPPRIS ALT1 TSL 1 (best) BASIC5.86□□□□□ -1.47
Sdc1P18828 Oscp1-201ENSMUST00000035497 5013 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
Sdc1P18828 Dapp1-203ENSMUST00000136613 2950 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
Sdc1P18828 Iqch-202ENSMUST00000080527 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC5.86□□□□□ -1.47
Sdc1P18828 Rpp40-201ENSMUST00000171686 4380 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
Sdc1P18828 Mrpl48-208ENSMUST00000150042 4285 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
Sdc1P18828 Zfp708-202ENSMUST00000109743 2536 ntAPPRIS ALT2 TSL 2 BASIC5.86□□□□□ -1.47
Sdc1P18828 Kel-201ENSMUST00000031899 2530 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
Sdc1P18828 Tmem41b-203ENSMUST00000119929 2346 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
Sdc1P18828 Gdap10-201ENSMUST00000180613 5003 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
Sdc1P18828 Gm35315-202ENSMUST00000210052 3523 ntAPPRIS P1 TSL 5 BASIC5.86□□□□□ -1.47
Sdc1P18828 Ccdc82-201ENSMUST00000110583 4642 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
Sdc1P18828 Gm45174-201ENSMUST00000208884 3065 ntBASIC5.85□□□□□ -1.47
Sdc1P18828 Pde1a-202ENSMUST00000102651 1673 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
Sdc1P18828 Vmn1r188-202ENSMUST00000226680 8374 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
Sdc1P18828 Pde1a-201ENSMUST00000090756 1661 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
Sdc1P18828 Olfr958-203ENSMUST00000217227 3831 ntAPPRIS P1 TSL 5 BASIC5.85□□□□□ -1.47
Sdc1P18828 Ubtfl1-201ENSMUST00000098973 1649 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
Sdc1P18828 Skil-201ENSMUST00000029194 6717 ntAPPRIS P3 TSL 5 BASIC5.85□□□□□ -1.47
Sdc1P18828 Vmn1r176-203ENSMUST00000226767 2536 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
Sdc1P18828 Vmn1r176-205ENSMUST00000227661 2507 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
Sdc1P18828 Vmn1r176-206ENSMUST00000228280 2532 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
Sdc1P18828 Ccdc66-201ENSMUST00000050480 2457 ntAPPRIS ALT2 TSL 1 (best) BASIC5.85□□□□□ -1.47
Sdc1P18828 Gm498-207ENSMUST00000207630 1483 ntTSL 5 BASIC5.85□□□□□ -1.47
Sdc1P18828 Bbs12-201ENSMUST00000057975 2433 ntAPPRIS P1 TSL 2 BASIC5.85□□□□□ -1.47
Sdc1P18828 Gm7978-201ENSMUST00000178552 1446 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
Sdc1P18828 Gm16429-201ENSMUST00000179824 1446 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
Sdc1P18828 4930448K20Rik-202ENSMUST00000182072 1433 ntBASIC5.85□□□□□ -1.47
Sdc1P18828 Cdc42bpa-202ENSMUST00000097450 5160 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
Sdc1P18828 A830082K12Rik-207ENSMUST00000183171 4176 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
Sdc1P18828 Vgll1-201ENSMUST00000033465 2281 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
Sdc1P18828 Chrnb3-202ENSMUST00000079463 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC5.85□□□□□ -1.47
Sdc1P18828 Ect2-202ENSMUST00000108298 4024 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
Sdc1P18828 Il18bp-201ENSMUST00000094134 1311 ntAPPRIS P2 TSL 1 (best) BASIC5.85□□□□□ -1.47
Sdc1P18828 Krt222-202ENSMUST00000103132 3072 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
Sdc1P18828 Slc17a4-202ENSMUST00000110407 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC5.85□□□□□ -1.47
Sdc1P18828 Ap3s1-ps1-201ENSMUST00000117113 579 ntBASIC5.85□□□□□ -1.47
Sdc1P18828 Gm8688-201ENSMUST00000118240 969 ntBASIC5.85□□□□□ -1.47
Sdc1P18828 Gm11972-201ENSMUST00000118514 389 ntBASIC5.85□□□□□ -1.47
Sdc1P18828 Gm11953-201ENSMUST00000122352 1003 ntBASIC5.85□□□□□ -1.47
Sdc1P18828 Gm11760-201ENSMUST00000122355 796 ntBASIC5.85□□□□□ -1.47
Sdc1P18828 Gm28053-201ENSMUST00000127537 350 ntAPPRIS P1 TSL 3 BASIC5.85□□□□□ -1.47
Retrieved 100 of 76,532 protein–RNA pairs in 69.1 ms