Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
Scn11aQ9R053 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC22.1■■□□□ 1.13
Scn11aQ9R053 Gm15378-201ENSMUST00000121894 207 ntBASIC22.1■■□□□ 1.13
Scn11aQ9R053 Gm10231-201ENSMUST00000181584 441 ntBASIC22.1■■□□□ 1.13
Scn11aQ9R053 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Scn11aQ9R053 Gm10175-202ENSMUST00000208752 441 ntBASIC22.1■■□□□ 1.13
Scn11aQ9R053 Aqp2-201ENSMUST00000023752 1416 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Scn11aQ9R053 Pdcd2-201ENSMUST00000054450 1120 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Scn11aQ9R053 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Scn11aQ9R053 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC22.1■■□□□ 1.13
Scn11aQ9R053 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
Scn11aQ9R053 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Scn11aQ9R053 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
Scn11aQ9R053 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Scn11aQ9R053 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Scn11aQ9R053 Gfra3-201ENSMUST00000025224 1992 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Scn11aQ9R053 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
Scn11aQ9R053 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
Scn11aQ9R053 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC22.09■■□□□ 1.13
Scn11aQ9R053 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Scn11aQ9R053 Gm43545-201ENSMUST00000196765 2779 ntBASIC22.09■■□□□ 1.13
Scn11aQ9R053 Zmynd19-202ENSMUST00000148042 1103 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
Scn11aQ9R053 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Scn11aQ9R053 Mdfic-202ENSMUST00000120512 1871 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
Scn11aQ9R053 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC22.09■■□□□ 1.13
Scn11aQ9R053 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC22.09■■□□□ 1.13
Scn11aQ9R053 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC22.08■■□□□ 1.13
Scn11aQ9R053 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC22.08■■□□□ 1.13
Scn11aQ9R053 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC22.08■■□□□ 1.13
Scn11aQ9R053 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC22.08■■□□□ 1.13
Scn11aQ9R053 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC22.08■■□□□ 1.13
Scn11aQ9R053 Eif3h-201ENSMUST00000022925 1295 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Scn11aQ9R053 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC22.08■■□□□ 1.13
Scn11aQ9R053 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
Scn11aQ9R053 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
Scn11aQ9R053 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
Scn11aQ9R053 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
Scn11aQ9R053 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC22.07■■□□□ 1.12
Scn11aQ9R053 H2-K2-201ENSMUST00000174250 1049 ntBASIC22.07■■□□□ 1.12
Scn11aQ9R053 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Scn11aQ9R053 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC22.07■■□□□ 1.12
Scn11aQ9R053 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
Scn11aQ9R053 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Scn11aQ9R053 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Scn11aQ9R053 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC22.07■■□□□ 1.12
Scn11aQ9R053 Tmem145-202ENSMUST00000119703 1781 ntAPPRIS ALT2 TSL 5 BASIC22.07■■□□□ 1.12
Scn11aQ9R053 Tnfaip8l2-201ENSMUST00000013851 1122 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Scn11aQ9R053 Gm21362-201ENSMUST00000194272 928 ntBASIC22.07■■□□□ 1.12
Scn11aQ9R053 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC22.07■■□□□ 1.12
Scn11aQ9R053 Gm18025-201ENSMUST00000221733 862 ntBASIC22.07■■□□□ 1.12
Scn11aQ9R053 AC154649.1-201ENSMUST00000227392 384 ntBASIC22.07■■□□□ 1.12
Scn11aQ9R053 Tmem192-201ENSMUST00000026595 1122 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
Scn11aQ9R053 Gm7367-201ENSMUST00000057611 492 ntBASIC22.07■■□□□ 1.12
Scn11aQ9R053 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC22.07■■□□□ 1.12
Scn11aQ9R053 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC22.06■■□□□ 1.12
Scn11aQ9R053 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC22.06■■□□□ 1.12
Scn11aQ9R053 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC22.06■■□□□ 1.12
Scn11aQ9R053 Smim12-201ENSMUST00000142029 1022 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Scn11aQ9R053 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC22.06■■□□□ 1.12
Scn11aQ9R053 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC22.06■■□□□ 1.12
Scn11aQ9R053 Hebp1-201ENSMUST00000045855 1058 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Scn11aQ9R053 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC22.06■■□□□ 1.12
Scn11aQ9R053 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC22.06■■□□□ 1.12
Scn11aQ9R053 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
Scn11aQ9R053 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
Scn11aQ9R053 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Scn11aQ9R053 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
Scn11aQ9R053 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC22.05■■□□□ 1.12
Scn11aQ9R053 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Scn11aQ9R053 Gm38285-201ENSMUST00000192928 922 ntBASIC22.05■■□□□ 1.12
Scn11aQ9R053 Gorasp2-202ENSMUST00000112201 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC22.05■■□□□ 1.12
Scn11aQ9R053 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
Scn11aQ9R053 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC22.05■■□□□ 1.12
Scn11aQ9R053 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC22.05■■□□□ 1.12
Scn11aQ9R053 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
Scn11aQ9R053 Gm20472-201ENSMUST00000174403 1240 ntBASIC22.04■■□□□ 1.12
Scn11aQ9R053 Qdpr-208ENSMUST00000197946 1206 ntTSL 5 BASIC22.04■■□□□ 1.12
Scn11aQ9R053 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
Scn11aQ9R053 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Scn11aQ9R053 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Scn11aQ9R053 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Scn11aQ9R053 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
Scn11aQ9R053 Gm45560-201ENSMUST00000211492 1472 ntBASIC22.04■■□□□ 1.12
Scn11aQ9R053 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
Scn11aQ9R053 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC22.04■■□□□ 1.12
Scn11aQ9R053 Gm15375-201ENSMUST00000119510 849 ntBASIC22.04■■□□□ 1.12
Scn11aQ9R053 Gm43799-201ENSMUST00000201845 579 ntBASIC22.04■■□□□ 1.12
Scn11aQ9R053 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Scn11aQ9R053 Gnb5-201ENSMUST00000076889 1188 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
Scn11aQ9R053 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC22.04■■□□□ 1.12
Scn11aQ9R053 Fam71b-201ENSMUST00000063166 2185 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
Scn11aQ9R053 Naa10-205ENSMUST00000114390 797 ntTSL 5 BASIC22.03■■□□□ 1.12
Scn11aQ9R053 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC22.03■■□□□ 1.12
Scn11aQ9R053 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC22.03■■□□□ 1.12
Scn11aQ9R053 Cenps-201ENSMUST00000030813 1110 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Scn11aQ9R053 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Scn11aQ9R053 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
Scn11aQ9R053 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Scn11aQ9R053 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC22.02■■□□□ 1.12
Scn11aQ9R053 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
Retrieved 100 of 76,532 protein–RNA pairs in 18.9 ms