Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Klhl25-201ENSMUST00000092073 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Smc1aQ9CU62 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC20.56■□□□□ 0.88
Smc1aQ9CU62 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Smc1aQ9CU62 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Smc1aQ9CU62 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Smc1aQ9CU62 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Smc1aQ9CU62 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
Smc1aQ9CU62 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
Smc1aQ9CU62 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Smc1aQ9CU62 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Smc1aQ9CU62 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Smc1aQ9CU62 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Smc1aQ9CU62 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Smc1aQ9CU62 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
Smc1aQ9CU62 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Smc1aQ9CU62 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Smc1aQ9CU62 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Smc1aQ9CU62 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Smc1aQ9CU62 Gm19439-201ENSMUST00000198195 2273 ntBASIC20.55■□□□□ 0.88
Smc1aQ9CU62 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Smc1aQ9CU62 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC20.54■□□□□ 0.88
Smc1aQ9CU62 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Smc1aQ9CU62 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Smc1aQ9CU62 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC20.54■□□□□ 0.88
Smc1aQ9CU62 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Smc1aQ9CU62 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
Smc1aQ9CU62 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Smc1aQ9CU62 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Smc1aQ9CU62 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Smc1aQ9CU62 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC20.53■□□□□ 0.88
Smc1aQ9CU62 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Smc1aQ9CU62 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
Smc1aQ9CU62 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Smc1aQ9CU62 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Smc1aQ9CU62 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Smc1aQ9CU62 Nespas-201ENSMUST00000143738 1083 ntBASIC20.52■□□□□ 0.88
Smc1aQ9CU62 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
Smc1aQ9CU62 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Smc1aQ9CU62 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC20.52■□□□□ 0.88
Smc1aQ9CU62 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
Smc1aQ9CU62 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Smc1aQ9CU62 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Smc1aQ9CU62 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Smc1aQ9CU62 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.87
Smc1aQ9CU62 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Smc1aQ9CU62 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
Smc1aQ9CU62 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Smc1aQ9CU62 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
Smc1aQ9CU62 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Smc1aQ9CU62 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
Smc1aQ9CU62 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Smc1aQ9CU62 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Smc1aQ9CU62 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
Smc1aQ9CU62 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
Smc1aQ9CU62 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
Smc1aQ9CU62 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Smc1aQ9CU62 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC20.5■□□□□ 0.87
Smc1aQ9CU62 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Smc1aQ9CU62 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Smc1aQ9CU62 Gm45141-201ENSMUST00000206502 1888 ntBASIC20.5■□□□□ 0.87
Smc1aQ9CU62 Gm3807-201ENSMUST00000193520 1168 ntBASIC20.5■□□□□ 0.87
Smc1aQ9CU62 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Smc1aQ9CU62 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Smc1aQ9CU62 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Smc1aQ9CU62 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC20.5■□□□□ 0.87
Smc1aQ9CU62 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Smc1aQ9CU62 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Smc1aQ9CU62 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Smc1aQ9CU62 Reep6-207ENSMUST00000186864 2015 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
Smc1aQ9CU62 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
Smc1aQ9CU62 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Smc1aQ9CU62 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
Smc1aQ9CU62 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Smc1aQ9CU62 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Smc1aQ9CU62 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
Smc1aQ9CU62 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Smc1aQ9CU62 Dlgap2-209ENSMUST00000152652 3842 ntAPPRIS P4 TSL 1 (best) BASIC20.49■□□□□ 0.87
Smc1aQ9CU62 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC20.49■□□□□ 0.87
Smc1aQ9CU62 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Smc1aQ9CU62 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC20.49■□□□□ 0.87
Smc1aQ9CU62 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Smc1aQ9CU62 Hspa5-202ENSMUST00000100171 2613 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Smc1aQ9CU62 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
Smc1aQ9CU62 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Smc1aQ9CU62 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Smc1aQ9CU62 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC20.48■□□□□ 0.87
Smc1aQ9CU62 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Smc1aQ9CU62 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC20.48■□□□□ 0.87
Smc1aQ9CU62 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Smc1aQ9CU62 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Smc1aQ9CU62 Gm4968-201ENSMUST00000071458 858 ntBASIC20.48■□□□□ 0.87
Smc1aQ9CU62 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Smc1aQ9CU62 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Smc1aQ9CU62 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Smc1aQ9CU62 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Smc1aQ9CU62 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Smc1aQ9CU62 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Smc1aQ9CU62 Sapcd2-203ENSMUST00000114293 1600 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Smc1aQ9CU62 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Smc1aQ9CU62 Gm10653-202ENSMUST00000139570 835 ntBASIC20.47■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 29.4 ms