Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Lsm1Q8VC85 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Lsm1Q8VC85 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC17.71■□□□□ 0.43
Lsm1Q8VC85 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Lsm1Q8VC85 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Lsm1Q8VC85 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Lsm1Q8VC85 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Lsm1Q8VC85 Gm45141-201ENSMUST00000206502 1888 ntBASIC17.71■□□□□ 0.43
Lsm1Q8VC85 Syde1-201ENSMUST00000040580 3288 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
Lsm1Q8VC85 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.42
Lsm1Q8VC85 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC17.7■□□□□ 0.42
Lsm1Q8VC85 Nfu1-202ENSMUST00000117583 950 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
Lsm1Q8VC85 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
Lsm1Q8VC85 Gm21168-201ENSMUST00000199646 1096 ntBASIC17.7■□□□□ 0.42
Lsm1Q8VC85 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC17.7■□□□□ 0.42
Lsm1Q8VC85 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
Lsm1Q8VC85 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
Lsm1Q8VC85 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC17.7■□□□□ 0.42
Lsm1Q8VC85 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Lsm1Q8VC85 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
Lsm1Q8VC85 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC17.7■□□□□ 0.42
Lsm1Q8VC85 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Lsm1Q8VC85 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Lsm1Q8VC85 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
Lsm1Q8VC85 Pex14-201ENSMUST00000103217 2006 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Lsm1Q8VC85 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC17.69■□□□□ 0.42
Lsm1Q8VC85 Gm13146-201ENSMUST00000118508 780 ntBASIC17.69■□□□□ 0.42
Lsm1Q8VC85 Gm2011-201ENSMUST00000203124 1263 ntBASIC17.69■□□□□ 0.42
Lsm1Q8VC85 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC17.69■□□□□ 0.42
Lsm1Q8VC85 Dtd2-202ENSMUST00000085404 1012 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Lsm1Q8VC85 Trmt112-201ENSMUST00000088257 957 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Lsm1Q8VC85 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Lsm1Q8VC85 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC17.69■□□□□ 0.42
Lsm1Q8VC85 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Lsm1Q8VC85 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Lsm1Q8VC85 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Lsm1Q8VC85 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Lsm1Q8VC85 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Lsm1Q8VC85 Vps9d1-203ENSMUST00000122363 2952 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
Lsm1Q8VC85 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Lsm1Q8VC85 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Lsm1Q8VC85 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Lsm1Q8VC85 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Lsm1Q8VC85 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Lsm1Q8VC85 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Lsm1Q8VC85 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Lsm1Q8VC85 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Lsm1Q8VC85 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC17.68■□□□□ 0.42
Lsm1Q8VC85 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Lsm1Q8VC85 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Lsm1Q8VC85 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Lsm1Q8VC85 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Lsm1Q8VC85 Nlrp5-ps-201ENSMUST00000044683 1913 ntTSL 2 BASIC17.68■□□□□ 0.42
Lsm1Q8VC85 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC17.68■□□□□ 0.42
Lsm1Q8VC85 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC17.68■□□□□ 0.42
Lsm1Q8VC85 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Lsm1Q8VC85 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Lsm1Q8VC85 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Lsm1Q8VC85 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Lsm1Q8VC85 Far2os2-201ENSMUST00000149815 980 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Lsm1Q8VC85 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC17.67■□□□□ 0.42
Lsm1Q8VC85 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Lsm1Q8VC85 Gm37805-201ENSMUST00000192612 1094 ntBASIC17.67■□□□□ 0.42
Lsm1Q8VC85 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
Lsm1Q8VC85 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Lsm1Q8VC85 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
Lsm1Q8VC85 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC17.67■□□□□ 0.42
Lsm1Q8VC85 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Lsm1Q8VC85 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
Lsm1Q8VC85 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Lsm1Q8VC85 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Lsm1Q8VC85 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Lsm1Q8VC85 A730060N03Rik-201ENSMUST00000174277 2124 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Lsm1Q8VC85 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Lsm1Q8VC85 Adam22-205ENSMUST00000115385 2318 ntTSL 2 BASIC17.66■□□□□ 0.42
Lsm1Q8VC85 Reep4-203ENSMUST00000226563 1444 ntBASIC17.66■□□□□ 0.42
Lsm1Q8VC85 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Lsm1Q8VC85 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Lsm1Q8VC85 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Lsm1Q8VC85 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC17.66■□□□□ 0.42
Lsm1Q8VC85 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC17.66■□□□□ 0.42
Lsm1Q8VC85 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Lsm1Q8VC85 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Lsm1Q8VC85 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Lsm1Q8VC85 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Lsm1Q8VC85 Gm45447-201ENSMUST00000209874 1805 ntTSL 5 BASIC17.65■□□□□ 0.42
Lsm1Q8VC85 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Lsm1Q8VC85 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Lsm1Q8VC85 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Lsm1Q8VC85 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Lsm1Q8VC85 Wnk2-205ENSMUST00000110097 6882 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Lsm1Q8VC85 Wnk2-203ENSMUST00000091623 6897 ntAPPRIS P4 TSL 5 BASIC17.65■□□□□ 0.42
Lsm1Q8VC85 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Lsm1Q8VC85 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Lsm1Q8VC85 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC17.65■□□□□ 0.42
Lsm1Q8VC85 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Lsm1Q8VC85 Josd2-218ENSMUST00000206887 693 ntTSL 5 BASIC17.65■□□□□ 0.42
Lsm1Q8VC85 Gm9988-201ENSMUST00000069786 435 ntBASIC17.65■□□□□ 0.42
Lsm1Q8VC85 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC17.65■□□□□ 0.42
Lsm1Q8VC85 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 18.6 ms