Protein–RNA interactions for Protein: Q8C006

Trim35, Tripartite motif-containing protein 35, mousemouse

Predictions only

Length 501 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim35Q8C006 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trim35Q8C006 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
Trim35Q8C006 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Trim35Q8C006 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
Trim35Q8C006 Gm28590-201ENSMUST00000185679 1609 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Trim35Q8C006 Rasl10b-202ENSMUST00000108140 3156 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
Trim35Q8C006 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
Trim35Q8C006 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
Trim35Q8C006 C130071C03Rik-203ENSMUST00000182788 1368 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Trim35Q8C006 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim35Q8C006 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC18.85■□□□□ 0.61
Trim35Q8C006 Gm22885-201ENSMUST00000157410 107 ntBASIC18.85■□□□□ 0.61
Trim35Q8C006 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC18.85■□□□□ 0.61
Trim35Q8C006 Gm26812-202ENSMUST00000181776 599 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
Trim35Q8C006 Gm42642-201ENSMUST00000200683 355 ntBASIC18.85■□□□□ 0.61
Trim35Q8C006 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
Trim35Q8C006 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trim35Q8C006 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trim35Q8C006 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trim35Q8C006 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
Trim35Q8C006 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trim35Q8C006 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC18.84■□□□□ 0.61
Trim35Q8C006 Gm21739-202ENSMUST00000188917 933 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
Trim35Q8C006 1700094J05Rik-202ENSMUST00000190491 997 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Trim35Q8C006 Gm43037-201ENSMUST00000196808 250 ntBASIC18.84■□□□□ 0.61
Trim35Q8C006 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Trim35Q8C006 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trim35Q8C006 Il6-201ENSMUST00000026845 1141 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trim35Q8C006 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Trim35Q8C006 Csnk2a2-203ENSMUST00000212214 6779 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trim35Q8C006 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trim35Q8C006 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC18.84■□□□□ 0.61
Trim35Q8C006 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
Trim35Q8C006 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trim35Q8C006 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trim35Q8C006 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trim35Q8C006 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trim35Q8C006 Eif4g3-202ENSMUST00000084214 6139 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.61
Trim35Q8C006 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
Trim35Q8C006 Prcd-201ENSMUST00000106381 724 ntTSL 3 BASIC18.83■□□□□ 0.6
Trim35Q8C006 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC18.83■□□□□ 0.6
Trim35Q8C006 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Trim35Q8C006 Sult1e1-201ENSMUST00000031201 1242 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Trim35Q8C006 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC18.83■□□□□ 0.6
Trim35Q8C006 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Trim35Q8C006 Myh7b-201ENSMUST00000092995 6163 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
Trim35Q8C006 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Trim35Q8C006 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Trim35Q8C006 Tbcel-201ENSMUST00000066148 5000 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim35Q8C006 Rasgrp1-201ENSMUST00000102534 5229 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
Trim35Q8C006 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Trim35Q8C006 Hormad1-201ENSMUST00000029754 1385 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim35Q8C006 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim35Q8C006 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim35Q8C006 Sept9-201ENSMUST00000019038 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim35Q8C006 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
Trim35Q8C006 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Trim35Q8C006 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
Trim35Q8C006 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim35Q8C006 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC18.82■□□□□ 0.6
Trim35Q8C006 Vmn1r185-201ENSMUST00000171039 1144 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
Trim35Q8C006 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Trim35Q8C006 Cox14-201ENSMUST00000023761 723 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim35Q8C006 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim35Q8C006 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim35Q8C006 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC18.82■□□□□ 0.6
Trim35Q8C006 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Trim35Q8C006 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC18.82■□□□□ 0.6
Trim35Q8C006 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim35Q8C006 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Trim35Q8C006 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Trim35Q8C006 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim35Q8C006 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Trim35Q8C006 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim35Q8C006 Cdkn3-203ENSMUST00000227149 1952 ntBASIC18.81■□□□□ 0.6
Trim35Q8C006 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim35Q8C006 Gm14776-201ENSMUST00000121029 887 ntBASIC18.81■□□□□ 0.6
Trim35Q8C006 Gm26736-201ENSMUST00000180425 1236 ntBASIC18.81■□□□□ 0.6
Trim35Q8C006 Gm10033-202ENSMUST00000211874 928 ntBASIC18.81■□□□□ 0.6
Trim35Q8C006 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim35Q8C006 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC18.81■□□□□ 0.6
Trim35Q8C006 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim35Q8C006 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Trim35Q8C006 Ankib1-201ENSMUST00000043551 6426 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Trim35Q8C006 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC18.8■□□□□ 0.6
Trim35Q8C006 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim35Q8C006 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim35Q8C006 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
Trim35Q8C006 Gm15908-201ENSMUST00000154345 1091 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Trim35Q8C006 9430065F17Rik-202ENSMUST00000180908 1084 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Trim35Q8C006 Gm26571-201ENSMUST00000181399 666 ntBASIC18.8■□□□□ 0.6
Trim35Q8C006 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC18.8■□□□□ 0.6
Trim35Q8C006 AC154252.1-201ENSMUST00000226041 473 ntBASIC18.8■□□□□ 0.6
Trim35Q8C006 Gm25131-201ENSMUST00000082653 151 ntBASIC18.8■□□□□ 0.6
Trim35Q8C006 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
Trim35Q8C006 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim35Q8C006 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Trim35Q8C006 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim35Q8C006 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
Trim35Q8C006 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 31.4 ms