Protein–RNA interactions for Protein: Q8BX13

Ube3d, E3 ubiquitin-protein ligase E3D, mousemouse

Predictions only

Length 368 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube3dQ8BX13 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC16.37■□□□□ 0.21
Ube3dQ8BX13 Mrgprf-202ENSMUST00000117718 1935 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Ube3dQ8BX13 Gm42939-201ENSMUST00000197514 2205 ntBASIC16.37■□□□□ 0.21
Ube3dQ8BX13 Gm32699-201ENSMUST00000221728 1988 ntBASIC16.37■□□□□ 0.21
Ube3dQ8BX13 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC16.37■□□□□ 0.21
Ube3dQ8BX13 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ube3dQ8BX13 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Ube3dQ8BX13 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
Ube3dQ8BX13 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ube3dQ8BX13 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ube3dQ8BX13 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ube3dQ8BX13 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ube3dQ8BX13 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
Ube3dQ8BX13 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ube3dQ8BX13 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Ube3dQ8BX13 Gm10602-201ENSMUST00000098239 609 ntBASIC16.36■□□□□ 0.21
Ube3dQ8BX13 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
Ube3dQ8BX13 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ube3dQ8BX13 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ube3dQ8BX13 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ube3dQ8BX13 Gm13146-201ENSMUST00000118508 780 ntBASIC16.35■□□□□ 0.21
Ube3dQ8BX13 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
Ube3dQ8BX13 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC16.35■□□□□ 0.21
Ube3dQ8BX13 CT010467.1-202ENSMUST00000205406 714 ntBASIC16.35■□□□□ 0.21
Ube3dQ8BX13 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC16.35■□□□□ 0.21
Ube3dQ8BX13 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Ube3dQ8BX13 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ube3dQ8BX13 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ube3dQ8BX13 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ube3dQ8BX13 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ube3dQ8BX13 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
Ube3dQ8BX13 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
Ube3dQ8BX13 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC16.35■□□□□ 0.21
Ube3dQ8BX13 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ube3dQ8BX13 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Ube3dQ8BX13 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
Ube3dQ8BX13 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Ube3dQ8BX13 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ube3dQ8BX13 Gm9885-202ENSMUST00000186234 2209 ntBASIC16.34■□□□□ 0.21
Ube3dQ8BX13 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC16.34■□□□□ 0.21
Ube3dQ8BX13 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ube3dQ8BX13 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ube3dQ8BX13 Gm12933-201ENSMUST00000120203 872 ntBASIC16.34■□□□□ 0.21
Ube3dQ8BX13 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Ube3dQ8BX13 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC16.34■□□□□ 0.21
Ube3dQ8BX13 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC16.34■□□□□ 0.21
Ube3dQ8BX13 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ube3dQ8BX13 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ube3dQ8BX13 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ube3dQ8BX13 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Ube3dQ8BX13 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC16.34■□□□□ 0.21
Ube3dQ8BX13 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC16.34■□□□□ 0.21
Ube3dQ8BX13 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Ube3dQ8BX13 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.21
Ube3dQ8BX13 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Ube3dQ8BX13 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
Ube3dQ8BX13 Dlg3-204ENSMUST00000113736 4940 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Ube3dQ8BX13 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC16.33■□□□□ 0.2
Ube3dQ8BX13 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC16.33■□□□□ 0.2
Ube3dQ8BX13 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.2
Ube3dQ8BX13 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Ube3dQ8BX13 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
Ube3dQ8BX13 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Ube3dQ8BX13 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC16.33■□□□□ 0.2
Ube3dQ8BX13 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Ube3dQ8BX13 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC16.33■□□□□ 0.2
Ube3dQ8BX13 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Ube3dQ8BX13 Ndufa10-201ENSMUST00000027478 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Ube3dQ8BX13 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
Ube3dQ8BX13 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ube3dQ8BX13 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ube3dQ8BX13 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Ube3dQ8BX13 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ube3dQ8BX13 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ube3dQ8BX13 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ube3dQ8BX13 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
Ube3dQ8BX13 Spcs1-207ENSMUST00000228767 1008 ntBASIC16.32■□□□□ 0.2
Ube3dQ8BX13 Dmtn-210ENSMUST00000228824 2377 ntBASIC16.32■□□□□ 0.2
Ube3dQ8BX13 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ube3dQ8BX13 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ube3dQ8BX13 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Ube3dQ8BX13 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
Ube3dQ8BX13 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Ube3dQ8BX13 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ube3dQ8BX13 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ube3dQ8BX13 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ube3dQ8BX13 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ube3dQ8BX13 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Ube3dQ8BX13 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ube3dQ8BX13 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Ube3dQ8BX13 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ube3dQ8BX13 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ube3dQ8BX13 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ube3dQ8BX13 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
Ube3dQ8BX13 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Ube3dQ8BX13 Krtcap3-205ENSMUST00000201625 902 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Ube3dQ8BX13 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Ube3dQ8BX13 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC16.31■□□□□ 0.2
Ube3dQ8BX13 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
Ube3dQ8BX13 Gm37352-201ENSMUST00000193908 2181 ntBASIC16.31■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 18.8 ms