Protein–RNA interactions for Protein: Q8BHH8

Clrn3, Clarin-3, mousemouse

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clrn3Q8BHH8 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Clrn3Q8BHH8 Trim72-202ENSMUST00000106248 2134 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
Clrn3Q8BHH8 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Clrn3Q8BHH8 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
Clrn3Q8BHH8 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Clrn3Q8BHH8 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Clrn3Q8BHH8 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Clrn3Q8BHH8 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
Clrn3Q8BHH8 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Clrn3Q8BHH8 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC17.28■□□□□ 0.36
Clrn3Q8BHH8 Gm13534-201ENSMUST00000121169 513 ntBASIC17.28■□□□□ 0.36
Clrn3Q8BHH8 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC17.28■□□□□ 0.36
Clrn3Q8BHH8 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC17.28■□□□□ 0.36
Clrn3Q8BHH8 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC17.28■□□□□ 0.36
Clrn3Q8BHH8 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Clrn3Q8BHH8 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Clrn3Q8BHH8 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Clrn3Q8BHH8 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC17.28■□□□□ 0.36
Clrn3Q8BHH8 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Clrn3Q8BHH8 Mid1-203ENSMUST00000079443 2815 ntTSL 5 BASIC17.28■□□□□ 0.36
Clrn3Q8BHH8 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Clrn3Q8BHH8 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Clrn3Q8BHH8 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Clrn3Q8BHH8 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC17.27■□□□□ 0.36
Clrn3Q8BHH8 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC17.27■□□□□ 0.36
Clrn3Q8BHH8 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Clrn3Q8BHH8 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Clrn3Q8BHH8 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Clrn3Q8BHH8 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Clrn3Q8BHH8 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
Clrn3Q8BHH8 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
Clrn3Q8BHH8 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Clrn3Q8BHH8 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Clrn3Q8BHH8 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Clrn3Q8BHH8 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC17.27■□□□□ 0.36
Clrn3Q8BHH8 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Clrn3Q8BHH8 Gm10033-202ENSMUST00000211874 928 ntBASIC17.27■□□□□ 0.36
Clrn3Q8BHH8 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Clrn3Q8BHH8 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
Clrn3Q8BHH8 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Clrn3Q8BHH8 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
Clrn3Q8BHH8 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC17.27■□□□□ 0.35
Clrn3Q8BHH8 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Clrn3Q8BHH8 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Clrn3Q8BHH8 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
Clrn3Q8BHH8 Gm18688-201ENSMUST00000204695 1859 ntBASIC17.27■□□□□ 0.35
Clrn3Q8BHH8 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Clrn3Q8BHH8 Slc6a8-204ENSMUST00000114467 2509 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Clrn3Q8BHH8 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC17.26■□□□□ 0.35
Clrn3Q8BHH8 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Clrn3Q8BHH8 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Clrn3Q8BHH8 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC17.26■□□□□ 0.35
Clrn3Q8BHH8 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Clrn3Q8BHH8 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC17.26■□□□□ 0.35
Clrn3Q8BHH8 Jade1-202ENSMUST00000163764 5584 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Clrn3Q8BHH8 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
Clrn3Q8BHH8 Sept9-201ENSMUST00000019038 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Clrn3Q8BHH8 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Clrn3Q8BHH8 Socs6-203ENSMUST00000125362 2814 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Clrn3Q8BHH8 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Clrn3Q8BHH8 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Clrn3Q8BHH8 Ak5-201ENSMUST00000045262 3323 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Clrn3Q8BHH8 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Clrn3Q8BHH8 Anp32a-201ENSMUST00000085519 2113 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Clrn3Q8BHH8 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Clrn3Q8BHH8 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Clrn3Q8BHH8 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
Clrn3Q8BHH8 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Clrn3Q8BHH8 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Clrn3Q8BHH8 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Clrn3Q8BHH8 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Clrn3Q8BHH8 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Clrn3Q8BHH8 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
Clrn3Q8BHH8 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
Clrn3Q8BHH8 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Clrn3Q8BHH8 Fst-202ENSMUST00000223640 2612 ntBASIC17.24■□□□□ 0.35
Clrn3Q8BHH8 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Clrn3Q8BHH8 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Clrn3Q8BHH8 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Clrn3Q8BHH8 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Clrn3Q8BHH8 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Clrn3Q8BHH8 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC17.24■□□□□ 0.35
Clrn3Q8BHH8 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Clrn3Q8BHH8 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Clrn3Q8BHH8 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Clrn3Q8BHH8 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
Clrn3Q8BHH8 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC17.24■□□□□ 0.35
Clrn3Q8BHH8 Gm37811-201ENSMUST00000192416 2601 ntBASIC17.24■□□□□ 0.35
Clrn3Q8BHH8 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
Clrn3Q8BHH8 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Clrn3Q8BHH8 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Clrn3Q8BHH8 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Clrn3Q8BHH8 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Clrn3Q8BHH8 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC17.23■□□□□ 0.35
Clrn3Q8BHH8 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Clrn3Q8BHH8 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Clrn3Q8BHH8 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Clrn3Q8BHH8 Lmo1-202ENSMUST00000207178 912 ntAPPRIS ALT1 TSL 2 BASIC17.23■□□□□ 0.35
Clrn3Q8BHH8 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Clrn3Q8BHH8 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 27.8 ms