Protein–RNA interactions for Protein: Q6NSQ5

Sp140, Sp140 nuclear body protein, mousemouse

Predictions only

Length 534 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sp140Q6NSQ5 Gm42778-201ENSMUST00000199644 553 ntBASIC18.73■□□□□ 0.59
Sp140Q6NSQ5 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC18.73■□□□□ 0.59
Sp140Q6NSQ5 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Sp140Q6NSQ5 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Sp140Q6NSQ5 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC18.73■□□□□ 0.59
Sp140Q6NSQ5 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
Sp140Q6NSQ5 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Sp140Q6NSQ5 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Sp140Q6NSQ5 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Sp140Q6NSQ5 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Sp140Q6NSQ5 Gm45906-201ENSMUST00000208911 1430 ntBASIC18.73■□□□□ 0.59
Sp140Q6NSQ5 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
Sp140Q6NSQ5 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Sp140Q6NSQ5 AC123834.2-201ENSMUST00000224038 2340 ntBASIC18.72■□□□□ 0.59
Sp140Q6NSQ5 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
Sp140Q6NSQ5 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Sp140Q6NSQ5 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Sp140Q6NSQ5 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC18.72■□□□□ 0.59
Sp140Q6NSQ5 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Sp140Q6NSQ5 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Sp140Q6NSQ5 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC18.72■□□□□ 0.59
Sp140Q6NSQ5 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Sp140Q6NSQ5 Rarb-207ENSMUST00000225921 2756 ntBASIC18.72■□□□□ 0.59
Sp140Q6NSQ5 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Sp140Q6NSQ5 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Sp140Q6NSQ5 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC18.71■□□□□ 0.59
Sp140Q6NSQ5 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Sp140Q6NSQ5 Ache-202ENSMUST00000085934 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Sp140Q6NSQ5 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Sp140Q6NSQ5 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Sp140Q6NSQ5 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC18.71■□□□□ 0.59
Sp140Q6NSQ5 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC18.71■□□□□ 0.59
Sp140Q6NSQ5 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Sp140Q6NSQ5 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Sp140Q6NSQ5 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Sp140Q6NSQ5 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Sp140Q6NSQ5 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.58
Sp140Q6NSQ5 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
Sp140Q6NSQ5 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC18.7■□□□□ 0.58
Sp140Q6NSQ5 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Sp140Q6NSQ5 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Sp140Q6NSQ5 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC18.7■□□□□ 0.58
Sp140Q6NSQ5 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Sp140Q6NSQ5 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Sp140Q6NSQ5 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Sp140Q6NSQ5 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Sp140Q6NSQ5 Arrb2-204ENSMUST00000102564 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Sp140Q6NSQ5 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Sp140Q6NSQ5 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Sp140Q6NSQ5 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Sp140Q6NSQ5 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Sp140Q6NSQ5 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC18.69■□□□□ 0.58
Sp140Q6NSQ5 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Sp140Q6NSQ5 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Sp140Q6NSQ5 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Sp140Q6NSQ5 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Sp140Q6NSQ5 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Sp140Q6NSQ5 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC18.69■□□□□ 0.58
Sp140Q6NSQ5 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
Sp140Q6NSQ5 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Sp140Q6NSQ5 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Sp140Q6NSQ5 Lifr-202ENSMUST00000164529 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Sp140Q6NSQ5 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Sp140Q6NSQ5 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Sp140Q6NSQ5 Gm10033-202ENSMUST00000211874 928 ntBASIC18.68■□□□□ 0.58
Sp140Q6NSQ5 Ap3s1-204ENSMUST00000225520 957 ntBASIC18.68■□□□□ 0.58
Sp140Q6NSQ5 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Sp140Q6NSQ5 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
Sp140Q6NSQ5 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Sp140Q6NSQ5 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Sp140Q6NSQ5 Gm10300-201ENSMUST00000094662 2296 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
Sp140Q6NSQ5 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
Sp140Q6NSQ5 Dhx15-201ENSMUST00000031061 3010 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Sp140Q6NSQ5 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Sp140Q6NSQ5 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Sp140Q6NSQ5 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
Sp140Q6NSQ5 Gm42939-201ENSMUST00000197514 2205 ntBASIC18.68■□□□□ 0.58
Sp140Q6NSQ5 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Sp140Q6NSQ5 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Sp140Q6NSQ5 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Sp140Q6NSQ5 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Sp140Q6NSQ5 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Sp140Q6NSQ5 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Sp140Q6NSQ5 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Sp140Q6NSQ5 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Sp140Q6NSQ5 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Sp140Q6NSQ5 Gm37805-201ENSMUST00000192612 1094 ntBASIC18.67■□□□□ 0.58
Sp140Q6NSQ5 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC18.67■□□□□ 0.58
Sp140Q6NSQ5 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC18.67■□□□□ 0.58
Sp140Q6NSQ5 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Sp140Q6NSQ5 AC131586.2-201ENSMUST00000228370 1512 ntBASIC18.67■□□□□ 0.58
Sp140Q6NSQ5 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Sp140Q6NSQ5 Ctf1-201ENSMUST00000047393 1352 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Sp140Q6NSQ5 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Sp140Q6NSQ5 Creg1-202ENSMUST00000111432 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Sp140Q6NSQ5 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Sp140Q6NSQ5 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Sp140Q6NSQ5 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Sp140Q6NSQ5 Gm16432-201ENSMUST00000094273 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Sp140Q6NSQ5 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 71.5 ms