Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Col11a1Q61245 Ttc14-211ENSMUST00000200271 2724 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col11a1Q61245 Pink1-201ENSMUST00000030536 2375 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col11a1Q61245 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
Col11a1Q61245 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC20.94■□□□□ 0.94
Col11a1Q61245 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col11a1Q61245 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col11a1Q61245 Piga-208ENSMUST00000208697 947 ntTSL 5 BASIC20.94■□□□□ 0.94
Col11a1Q61245 Grcc10-201ENSMUST00000004389 863 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col11a1Q61245 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
Col11a1Q61245 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
Col11a1Q61245 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC20.93■□□□□ 0.94
Col11a1Q61245 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Col11a1Q61245 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC20.93■□□□□ 0.94
Col11a1Q61245 9130019P16Rik-201ENSMUST00000135612 1019 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Col11a1Q61245 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Col11a1Q61245 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Col11a1Q61245 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Col11a1Q61245 Hist1h2bf-201ENSMUST00000105106 461 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
Col11a1Q61245 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Col11a1Q61245 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Col11a1Q61245 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Col11a1Q61245 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
Col11a1Q61245 Mzt2-202ENSMUST00000117136 758 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Col11a1Q61245 1810026B05Rik-205ENSMUST00000184855 409 ntTSL 3 BASIC20.92■□□□□ 0.94
Col11a1Q61245 Gm9745-201ENSMUST00000021573 684 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
Col11a1Q61245 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Col11a1Q61245 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Col11a1Q61245 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC20.91■□□□□ 0.94
Col11a1Q61245 Slc35g2-201ENSMUST00000093792 1590 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
Col11a1Q61245 Dlk2-202ENSMUST00000166280 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Col11a1Q61245 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
Col11a1Q61245 Gm12085-201ENSMUST00000119263 940 ntBASIC20.91■□□□□ 0.94
Col11a1Q61245 Fbxo9-203ENSMUST00000159099 1201 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Col11a1Q61245 Hint1-201ENSMUST00000020504 636 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Col11a1Q61245 Gm45058-201ENSMUST00000205810 766 ntBASIC20.91■□□□□ 0.94
Col11a1Q61245 AC154471.1-201ENSMUST00000224418 436 ntBASIC20.91■□□□□ 0.94
Col11a1Q61245 Gnb5-201ENSMUST00000076889 1188 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Col11a1Q61245 Kctd2-202ENSMUST00000106533 2649 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Col11a1Q61245 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Col11a1Q61245 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
Col11a1Q61245 Flot2-203ENSMUST00000100784 2699 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Col11a1Q61245 AL591207.1-203ENSMUST00000222401 1380 ntTSL 5 BASIC20.91■□□□□ 0.94
Col11a1Q61245 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Col11a1Q61245 Ntpcr-201ENSMUST00000034313 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Col11a1Q61245 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Col11a1Q61245 Pdp1-204ENSMUST00000108299 2588 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
Col11a1Q61245 C030014I23Rik-201ENSMUST00000080911 1810 ntBASIC20.9■□□□□ 0.94
Col11a1Q61245 Cyb5a-204ENSMUST00000160180 1363 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Col11a1Q61245 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Col11a1Q61245 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC20.9■□□□□ 0.94
Col11a1Q61245 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Col11a1Q61245 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Col11a1Q61245 Gm44544-201ENSMUST00000207052 1844 ntBASIC20.89■□□□□ 0.93
Col11a1Q61245 Ramp2-204ENSMUST00000129680 1178 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Col11a1Q61245 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Col11a1Q61245 Gm10489-201ENSMUST00000180511 1466 ntTSL 2 BASIC20.89■□□□□ 0.93
Col11a1Q61245 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Col11a1Q61245 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
Col11a1Q61245 Hsbp1-202ENSMUST00000212468 638 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
Col11a1Q61245 D230030E09Rik-201ENSMUST00000222459 884 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Col11a1Q61245 Tmem51-201ENSMUST00000036572 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Col11a1Q61245 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
Col11a1Q61245 Agtpbp1-222ENSMUST00000171606 3037 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Col11a1Q61245 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC20.88■□□□□ 0.93
Col11a1Q61245 Yif1b-203ENSMUST00000108238 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Col11a1Q61245 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Col11a1Q61245 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC20.88■□□□□ 0.93
Col11a1Q61245 Tmem145-202ENSMUST00000119703 1781 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
Col11a1Q61245 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Col11a1Q61245 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Col11a1Q61245 Gm6209-202ENSMUST00000194629 1506 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Col11a1Q61245 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
Col11a1Q61245 Asnsd1-202ENSMUST00000123519 983 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Col11a1Q61245 Gm15545-202ENSMUST00000141011 899 ntTSL 3 BASIC20.87■□□□□ 0.93
Col11a1Q61245 AC134329.2-201ENSMUST00000217897 428 ntBASIC20.87■□□□□ 0.93
Col11a1Q61245 Rpp25l-201ENSMUST00000038434 856 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Col11a1Q61245 Krt1-201ENSMUST00000023790 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Col11a1Q61245 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
Col11a1Q61245 Hapln2-201ENSMUST00000005014 1711 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Col11a1Q61245 Inafm2-201ENSMUST00000149978 3053 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
Col11a1Q61245 Sh2b2-204ENSMUST00000196447 1783 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Col11a1Q61245 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
Col11a1Q61245 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
Col11a1Q61245 AC130711.1-201ENSMUST00000224277 906 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
Col11a1Q61245 Guca1a-201ENSMUST00000059348 871 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Col11a1Q61245 Prss27-201ENSMUST00000059482 1253 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Col11a1Q61245 2310039H08Rik-201ENSMUST00000071430 773 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
Col11a1Q61245 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Col11a1Q61245 Acvr1c-204ENSMUST00000112608 1497 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
Col11a1Q61245 1700096K18Rik-201ENSMUST00000188465 1454 ntBASIC20.86■□□□□ 0.93
Col11a1Q61245 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Col11a1Q61245 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Col11a1Q61245 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Col11a1Q61245 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Col11a1Q61245 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Col11a1Q61245 Gm12781-201ENSMUST00000146269 395 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Col11a1Q61245 Gm42738-201ENSMUST00000201813 439 ntTSL 3 BASIC20.85■□□□□ 0.93
Col11a1Q61245 Il17a-201ENSMUST00000027061 1171 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Col11a1Q61245 Mdfi-201ENSMUST00000035375 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 18.7 ms