Protein–RNA interactions for Protein: Q5I043

Usp28, Ubiquitin carboxyl-terminal hydrolase 28, mousemouse

Predictions only

Length 1,051 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp28Q5I043 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Usp28Q5I043 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
Usp28Q5I043 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
Usp28Q5I043 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
Usp28Q5I043 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Usp28Q5I043 Mag-207ENSMUST00000191081 2007 ntAPPRIS ALT1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Usp28Q5I043 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC21.01■□□□□ 0.95
Usp28Q5I043 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC21.01■□□□□ 0.95
Usp28Q5I043 Ssc4d-204ENSMUST00000111153 2745 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
Usp28Q5I043 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Usp28Q5I043 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Usp28Q5I043 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Usp28Q5I043 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Usp28Q5I043 Abhd5-202ENSMUST00000111497 2576 ntTSL 1 (best) BASIC21■□□□□ 0.95
Usp28Q5I043 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Usp28Q5I043 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Usp28Q5I043 Gm45447-201ENSMUST00000209874 1805 ntTSL 5 BASIC21■□□□□ 0.95
Usp28Q5I043 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC21■□□□□ 0.95
Usp28Q5I043 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC21■□□□□ 0.95
Usp28Q5I043 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC21■□□□□ 0.95
Usp28Q5I043 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Usp28Q5I043 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Usp28Q5I043 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
Usp28Q5I043 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Usp28Q5I043 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Usp28Q5I043 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Usp28Q5I043 AC107452.1-201ENSMUST00000227963 481 ntBASIC20.99■□□□□ 0.95
Usp28Q5I043 Gm9988-201ENSMUST00000069786 435 ntBASIC20.99■□□□□ 0.95
Usp28Q5I043 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Usp28Q5I043 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Usp28Q5I043 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Usp28Q5I043 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
Usp28Q5I043 Gm5828-201ENSMUST00000071842 1860 ntBASIC20.98■□□□□ 0.95
Usp28Q5I043 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Usp28Q5I043 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Usp28Q5I043 Orai3-201ENSMUST00000061587 1996 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Usp28Q5I043 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Usp28Q5I043 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC20.98■□□□□ 0.95
Usp28Q5I043 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
Usp28Q5I043 Klhl25-201ENSMUST00000092073 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Usp28Q5I043 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Usp28Q5I043 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Usp28Q5I043 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Usp28Q5I043 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
Usp28Q5I043 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC20.97■□□□□ 0.95
Usp28Q5I043 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Usp28Q5I043 Gm13534-201ENSMUST00000121169 513 ntBASIC20.97■□□□□ 0.95
Usp28Q5I043 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC20.97■□□□□ 0.95
Usp28Q5I043 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Usp28Q5I043 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Usp28Q5I043 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC20.97■□□□□ 0.95
Usp28Q5I043 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Usp28Q5I043 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC20.97■□□□□ 0.95
Usp28Q5I043 Gm8309-201ENSMUST00000206627 1448 ntBASIC20.96■□□□□ 0.95
Usp28Q5I043 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Usp28Q5I043 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Usp28Q5I043 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC20.96■□□□□ 0.95
Usp28Q5I043 Nol7-205ENSMUST00000222499 756 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Usp28Q5I043 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Usp28Q5I043 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Usp28Q5I043 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Usp28Q5I043 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Usp28Q5I043 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
Usp28Q5I043 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Usp28Q5I043 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Usp28Q5I043 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Usp28Q5I043 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
Usp28Q5I043 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Usp28Q5I043 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
Usp28Q5I043 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
Usp28Q5I043 Gamt-201ENSMUST00000020359 979 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Usp28Q5I043 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC20.95■□□□□ 0.94
Usp28Q5I043 Tulp1-201ENSMUST00000041819 2017 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Usp28Q5I043 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Usp28Q5I043 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Usp28Q5I043 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Usp28Q5I043 Plekhf2-201ENSMUST00000054776 2977 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Usp28Q5I043 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Usp28Q5I043 Rasl10b-202ENSMUST00000108140 3156 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
Usp28Q5I043 Ldlrad4-201ENSMUST00000063775 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Usp28Q5I043 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC20.94■□□□□ 0.94
Usp28Q5I043 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Usp28Q5I043 Rasgrp2-224ENSMUST00000167240 2192 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
Usp28Q5I043 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC20.94■□□□□ 0.94
Usp28Q5I043 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Usp28Q5I043 Gm9194-201ENSMUST00000220749 1447 ntBASIC20.94■□□□□ 0.94
Usp28Q5I043 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Usp28Q5I043 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Usp28Q5I043 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Usp28Q5I043 AC121961.1-201ENSMUST00000218594 1779 ntBASIC20.93■□□□□ 0.94
Usp28Q5I043 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC20.93■□□□□ 0.94
Usp28Q5I043 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Usp28Q5I043 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
Usp28Q5I043 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
Usp28Q5I043 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Usp28Q5I043 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Usp28Q5I043 Podxl-201ENSMUST00000026698 5379 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Usp28Q5I043 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Usp28Q5I043 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Usp28Q5I043 Gm37811-201ENSMUST00000192416 2601 ntBASIC20.92■□□□□ 0.94
Retrieved 100 of 76,532 protein–RNA pairs in 10.5 ms