Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim40Q3UWA4 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim40Q3UWA4 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
Trim40Q3UWA4 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim40Q3UWA4 Moap1-201ENSMUST00000173760 1312 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
Trim40Q3UWA4 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Trim40Q3UWA4 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Trim40Q3UWA4 Gm45102-201ENSMUST00000207427 857 ntBASIC17.32■□□□□ 0.36
Trim40Q3UWA4 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Trim40Q3UWA4 Rps24-207ENSMUST00000224568 714 ntBASIC17.32■□□□□ 0.36
Trim40Q3UWA4 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC17.32■□□□□ 0.36
Trim40Q3UWA4 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim40Q3UWA4 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim40Q3UWA4 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC17.32■□□□□ 0.36
Trim40Q3UWA4 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
Trim40Q3UWA4 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim40Q3UWA4 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
Trim40Q3UWA4 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim40Q3UWA4 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim40Q3UWA4 Stard4-203ENSMUST00000119991 941 ntTSL 5 BASIC17.31■□□□□ 0.36
Trim40Q3UWA4 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Trim40Q3UWA4 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim40Q3UWA4 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim40Q3UWA4 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim40Q3UWA4 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Trim40Q3UWA4 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Trim40Q3UWA4 Tomm40-202ENSMUST00000093552 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim40Q3UWA4 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Trim40Q3UWA4 Acot1-201ENSMUST00000168120 2272 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Trim40Q3UWA4 Zfp277-201ENSMUST00000069637 2188 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim40Q3UWA4 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim40Q3UWA4 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim40Q3UWA4 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim40Q3UWA4 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim40Q3UWA4 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim40Q3UWA4 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim40Q3UWA4 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim40Q3UWA4 Kras-202ENSMUST00000111710 1194 ntTSL 5 BASIC17.3■□□□□ 0.36
Trim40Q3UWA4 Gm14117-201ENSMUST00000122417 843 ntBASIC17.3■□□□□ 0.36
Trim40Q3UWA4 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Trim40Q3UWA4 2310061I04Rik-203ENSMUST00000148482 1193 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Trim40Q3UWA4 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Trim40Q3UWA4 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Trim40Q3UWA4 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim40Q3UWA4 Glrx2-210ENSMUST00000185362 3337 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim40Q3UWA4 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim40Q3UWA4 Ckap4-202ENSMUST00000167671 2606 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Trim40Q3UWA4 Map3k10-202ENSMUST00000108341 3403 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Trim40Q3UWA4 Matn4-204ENSMUST00000109359 2179 ntTSL 5 BASIC17.29■□□□□ 0.36
Trim40Q3UWA4 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Trim40Q3UWA4 AC121598.2-201ENSMUST00000228376 2325 ntBASIC17.29■□□□□ 0.36
Trim40Q3UWA4 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC17.29■□□□□ 0.36
Trim40Q3UWA4 Rnf187-202ENSMUST00000217262 711 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim40Q3UWA4 Gltpd2-201ENSMUST00000057685 1216 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim40Q3UWA4 C1ql4-201ENSMUST00000064462 874 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim40Q3UWA4 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC17.29■□□□□ 0.36
Trim40Q3UWA4 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim40Q3UWA4 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim40Q3UWA4 Dhx36-201ENSMUST00000029336 5620 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim40Q3UWA4 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Trim40Q3UWA4 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Trim40Q3UWA4 Map3k1-201ENSMUST00000109267 6978 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
Trim40Q3UWA4 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Trim40Q3UWA4 Bmt2-201ENSMUST00000045235 4143 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim40Q3UWA4 4930439D14Rik-201ENSMUST00000186765 359 ntBASIC17.28■□□□□ 0.36
Trim40Q3UWA4 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC17.28■□□□□ 0.36
Trim40Q3UWA4 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC17.28■□□□□ 0.36
Trim40Q3UWA4 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim40Q3UWA4 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim40Q3UWA4 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim40Q3UWA4 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim40Q3UWA4 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Trim40Q3UWA4 Ankib1-201ENSMUST00000043551 6426 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim40Q3UWA4 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC17.27■□□□□ 0.36
Trim40Q3UWA4 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC17.27■□□□□ 0.36
Trim40Q3UWA4 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC17.27■□□□□ 0.36
Trim40Q3UWA4 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
Trim40Q3UWA4 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
Trim40Q3UWA4 Cep83-201ENSMUST00000020212 3639 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim40Q3UWA4 Cacna1a-202ENSMUST00000122053 7589 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim40Q3UWA4 Gm45906-201ENSMUST00000208911 1430 ntBASIC17.27■□□□□ 0.35
Trim40Q3UWA4 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Trim40Q3UWA4 Fcho2-208ENSMUST00000224992 2964 ntBASIC17.27■□□□□ 0.35
Trim40Q3UWA4 Gm5898-201ENSMUST00000121016 2071 ntBASIC17.27■□□□□ 0.35
Trim40Q3UWA4 Gm29514-202ENSMUST00000186665 2214 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Trim40Q3UWA4 Gm43548-201ENSMUST00000197139 2353 ntBASIC17.26■□□□□ 0.35
Trim40Q3UWA4 Rnf44-208ENSMUST00000128257 1689 ntTSL 5 BASIC17.26■□□□□ 0.35
Trim40Q3UWA4 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim40Q3UWA4 Gm9954-202ENSMUST00000198686 4725 ntBASIC17.26■□□□□ 0.35
Trim40Q3UWA4 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim40Q3UWA4 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim40Q3UWA4 Alad-201ENSMUST00000030090 1206 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim40Q3UWA4 Kmt5b-201ENSMUST00000005518 1283 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
Trim40Q3UWA4 Gnao1-201ENSMUST00000034198 2948 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim40Q3UWA4 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim40Q3UWA4 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
Trim40Q3UWA4 Dusp8-201ENSMUST00000039926 4804 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim40Q3UWA4 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim40Q3UWA4 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Trim40Q3UWA4 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 15.3 ms