Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Spcs1-207ENSMUST00000228767 1008 ntBASIC17.89■□□□□ 0.45
Col28a1Q2UY11 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
Col28a1Q2UY11 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Col28a1Q2UY11 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Col28a1Q2UY11 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Col28a1Q2UY11 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Col28a1Q2UY11 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Col28a1Q2UY11 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC17.88■□□□□ 0.45
Col28a1Q2UY11 Mtrf1l-201ENSMUST00000019908 2588 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Col28a1Q2UY11 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC17.88■□□□□ 0.45
Col28a1Q2UY11 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Col28a1Q2UY11 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Col28a1Q2UY11 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC17.88■□□□□ 0.45
Col28a1Q2UY11 Gsc-201ENSMUST00000021513 1268 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Col28a1Q2UY11 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC17.88■□□□□ 0.45
Col28a1Q2UY11 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Col28a1Q2UY11 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Col28a1Q2UY11 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Col28a1Q2UY11 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
Col28a1Q2UY11 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Col28a1Q2UY11 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Col28a1Q2UY11 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Col28a1Q2UY11 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Col28a1Q2UY11 Fam71b-201ENSMUST00000063166 2185 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Col28a1Q2UY11 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC17.87■□□□□ 0.45
Col28a1Q2UY11 Hist1h2bp-201ENSMUST00000102982 469 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
Col28a1Q2UY11 Tmbim6-202ENSMUST00000159209 944 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
Col28a1Q2UY11 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC17.87■□□□□ 0.45
Col28a1Q2UY11 Cdkn2a-201ENSMUST00000060501 852 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Col28a1Q2UY11 Mrgprf-202ENSMUST00000117718 1935 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Col28a1Q2UY11 Gabpb1-203ENSMUST00000103226 1338 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Col28a1Q2UY11 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC17.87■□□□□ 0.45
Col28a1Q2UY11 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Col28a1Q2UY11 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Col28a1Q2UY11 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Col28a1Q2UY11 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Col28a1Q2UY11 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Col28a1Q2UY11 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Col28a1Q2UY11 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Col28a1Q2UY11 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
Col28a1Q2UY11 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC17.86■□□□□ 0.45
Col28a1Q2UY11 G730003C15Rik-202ENSMUST00000189096 2309 ntBASIC17.86■□□□□ 0.45
Col28a1Q2UY11 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Col28a1Q2UY11 Gm43702-201ENSMUST00000198772 2546 ntBASIC17.86■□□□□ 0.45
Col28a1Q2UY11 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC17.86■□□□□ 0.45
Col28a1Q2UY11 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Col28a1Q2UY11 Gm26833-201ENSMUST00000180899 440 ntBASIC17.86■□□□□ 0.45
Col28a1Q2UY11 Gm26571-201ENSMUST00000181399 666 ntBASIC17.86■□□□□ 0.45
Col28a1Q2UY11 Gm7160-202ENSMUST00000188519 1027 ntBASIC17.86■□□□□ 0.45
Col28a1Q2UY11 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Col28a1Q2UY11 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Col28a1Q2UY11 B4galt5-201ENSMUST00000109221 4210 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Col28a1Q2UY11 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Col28a1Q2UY11 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC17.86■□□□□ 0.45
Col28a1Q2UY11 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Col28a1Q2UY11 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
Col28a1Q2UY11 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Col28a1Q2UY11 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Col28a1Q2UY11 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Col28a1Q2UY11 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Col28a1Q2UY11 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
Col28a1Q2UY11 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Col28a1Q2UY11 Zfp219-204ENSMUST00000226522 2804 ntAPPRIS P2 BASIC17.85■□□□□ 0.45
Col28a1Q2UY11 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC17.85■□□□□ 0.45
Col28a1Q2UY11 Eif4g3-201ENSMUST00000058133 2663 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Col28a1Q2UY11 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Col28a1Q2UY11 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
Col28a1Q2UY11 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Col28a1Q2UY11 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Col28a1Q2UY11 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Col28a1Q2UY11 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
Col28a1Q2UY11 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Col28a1Q2UY11 Hspa5-202ENSMUST00000100171 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Col28a1Q2UY11 Gm42569-201ENSMUST00000200539 472 ntBASIC17.84■□□□□ 0.45
Col28a1Q2UY11 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Col28a1Q2UY11 Tacc3-203ENSMUST00000114426 2187 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
Col28a1Q2UY11 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC17.83■□□□□ 0.45
Col28a1Q2UY11 Nova2-202ENSMUST00000220302 8372 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
Col28a1Q2UY11 Nova2-201ENSMUST00000032571 8372 ntTSL 5 BASIC17.83■□□□□ 0.45
Col28a1Q2UY11 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Col28a1Q2UY11 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Col28a1Q2UY11 Dpys-202ENSMUST00000110306 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Col28a1Q2UY11 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC17.83■□□□□ 0.44
Col28a1Q2UY11 Dap-205ENSMUST00000186547 535 ntTSL 3 BASIC17.83■□□□□ 0.44
Col28a1Q2UY11 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC17.83■□□□□ 0.44
Col28a1Q2UY11 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC17.83■□□□□ 0.44
Col28a1Q2UY11 Gm10493-201ENSMUST00000097270 612 ntBASIC17.83■□□□□ 0.44
Col28a1Q2UY11 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Col28a1Q2UY11 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Col28a1Q2UY11 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Col28a1Q2UY11 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Col28a1Q2UY11 4930560O18Rik-201ENSMUST00000207051 1595 ntBASIC17.83■□□□□ 0.44
Col28a1Q2UY11 Prmt6-201ENSMUST00000106567 2450 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
Col28a1Q2UY11 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col28a1Q2UY11 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col28a1Q2UY11 Lsp1-202ENSMUST00000038946 1828 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col28a1Q2UY11 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Col28a1Q2UY11 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col28a1Q2UY11 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Col28a1Q2UY11 Gm43060-201ENSMUST00000200621 289 ntBASIC17.82■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 21.5 ms