Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC20.3■□□□□ 0.84
Hmgb1P63158 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Hmgb1P63158 CT010467.1-202ENSMUST00000205406 714 ntBASIC20.3■□□□□ 0.84
Hmgb1P63158 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
Hmgb1P63158 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Hmgb1P63158 Smap2-201ENSMUST00000043200 2905 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Hmgb1P63158 Gm35558-201ENSMUST00000222675 2219 ntBASIC20.3■□□□□ 0.84
Hmgb1P63158 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Hmgb1P63158 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Hmgb1P63158 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Hmgb1P63158 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Hmgb1P63158 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Hmgb1P63158 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Hmgb1P63158 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Hmgb1P63158 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
Hmgb1P63158 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC20.29■□□□□ 0.84
Hmgb1P63158 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Hmgb1P63158 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC20.29■□□□□ 0.84
Hmgb1P63158 Gm2011-201ENSMUST00000203124 1263 ntBASIC20.29■□□□□ 0.84
Hmgb1P63158 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
Hmgb1P63158 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC20.29■□□□□ 0.84
Hmgb1P63158 Nol7-205ENSMUST00000222499 756 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Hmgb1P63158 Gpc6-204ENSMUST00000125435 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Hmgb1P63158 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
Hmgb1P63158 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Hmgb1P63158 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Hmgb1P63158 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Hmgb1P63158 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
Hmgb1P63158 Gm13146-201ENSMUST00000118508 780 ntBASIC20.28■□□□□ 0.84
Hmgb1P63158 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC20.28■□□□□ 0.84
Hmgb1P63158 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Hmgb1P63158 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Hmgb1P63158 Gm9988-201ENSMUST00000069786 435 ntBASIC20.28■□□□□ 0.84
Hmgb1P63158 Tspan17-202ENSMUST00000099503 822 ntAPPRIS ALT1 TSL 5 BASIC20.28■□□□□ 0.84
Hmgb1P63158 Fam105a-203ENSMUST00000226170 3043 ntBASIC20.28■□□□□ 0.84
Hmgb1P63158 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Hmgb1P63158 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Hmgb1P63158 Tyw5-209ENSMUST00000162686 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Hmgb1P63158 AC123834.2-201ENSMUST00000224038 2340 ntBASIC20.27■□□□□ 0.84
Hmgb1P63158 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC20.27■□□□□ 0.84
Hmgb1P63158 4930452B06Rik-201ENSMUST00000102996 2681 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Hmgb1P63158 Gm42922-201ENSMUST00000195887 2078 ntBASIC20.27■□□□□ 0.84
Hmgb1P63158 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC20.27■□□□□ 0.84
Hmgb1P63158 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Hmgb1P63158 Sh3bp1-202ENSMUST00000061239 1917 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Hmgb1P63158 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
Hmgb1P63158 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.83
Hmgb1P63158 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Hmgb1P63158 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Hmgb1P63158 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Hmgb1P63158 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Hmgb1P63158 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
Hmgb1P63158 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
Hmgb1P63158 AC154231.1-201ENSMUST00000220564 2175 ntBASIC20.26■□□□□ 0.83
Hmgb1P63158 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Hmgb1P63158 Map7d2-203ENSMUST00000112471 3670 ntAPPRIS P3 TSL 5 BASIC20.25■□□□□ 0.83
Hmgb1P63158 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Hmgb1P63158 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Hmgb1P63158 Cnpy1-201ENSMUST00000117098 2661 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Hmgb1P63158 Gm26971-201ENSMUST00000182423 1072 ntBASIC20.25■□□□□ 0.83
Hmgb1P63158 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Hmgb1P63158 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC20.25■□□□□ 0.83
Hmgb1P63158 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Hmgb1P63158 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Hmgb1P63158 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Hmgb1P63158 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Hmgb1P63158 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Hmgb1P63158 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Hmgb1P63158 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Hmgb1P63158 Gm5953-201ENSMUST00000220644 2616 ntBASIC20.24■□□□□ 0.83
Hmgb1P63158 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Hmgb1P63158 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Hmgb1P63158 Insig2-201ENSMUST00000003818 2697 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Hmgb1P63158 Tymp-201ENSMUST00000023285 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Hmgb1P63158 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
Hmgb1P63158 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Hmgb1P63158 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
Hmgb1P63158 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC20.24■□□□□ 0.83
Hmgb1P63158 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Hmgb1P63158 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Hmgb1P63158 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
Hmgb1P63158 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Hmgb1P63158 Pcyt2-201ENSMUST00000026129 1881 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
Hmgb1P63158 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Hmgb1P63158 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC20.24■□□□□ 0.83
Hmgb1P63158 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC20.24■□□□□ 0.83
Hmgb1P63158 Gm10167-201ENSMUST00000150411 1479 ntBASIC20.24■□□□□ 0.83
Hmgb1P63158 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC20.24■□□□□ 0.83
Hmgb1P63158 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
Hmgb1P63158 Grk6-206ENSMUST00000224995 2971 ntBASIC20.23■□□□□ 0.83
Hmgb1P63158 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
Hmgb1P63158 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Hmgb1P63158 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Hmgb1P63158 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Hmgb1P63158 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC20.23■□□□□ 0.83
Hmgb1P63158 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC20.23■□□□□ 0.83
Hmgb1P63158 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC20.23■□□□□ 0.83
Hmgb1P63158 Reep4-203ENSMUST00000226563 1444 ntBASIC20.23■□□□□ 0.83
Hmgb1P63158 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Hmgb1P63158 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 19.3 ms