Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Col1a1P11087 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Col1a1P11087 Fev-201ENSMUST00000068631 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Col1a1P11087 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Col1a1P11087 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC21.78■■□□□ 1.08
Col1a1P11087 P2rx2-201ENSMUST00000058016 1895 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
Col1a1P11087 Zfp105-201ENSMUST00000051667 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Col1a1P11087 B4gat1-201ENSMUST00000053705 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Col1a1P11087 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
Col1a1P11087 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Col1a1P11087 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Col1a1P11087 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
Col1a1P11087 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Col1a1P11087 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
Col1a1P11087 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
Col1a1P11087 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
Col1a1P11087 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
Col1a1P11087 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.07
Col1a1P11087 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
Col1a1P11087 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Col1a1P11087 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Col1a1P11087 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Col1a1P11087 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Col1a1P11087 Hist1h2bh-201ENSMUST00000224359 1679 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
Col1a1P11087 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC21.76■■□□□ 1.07
Col1a1P11087 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Col1a1P11087 Ppic-201ENSMUST00000025419 1286 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Col1a1P11087 Zfp36l1-202ENSMUST00000165114 1934 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
Col1a1P11087 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
Col1a1P11087 Rasgrp2-206ENSMUST00000113472 2124 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Col1a1P11087 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Col1a1P11087 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Col1a1P11087 Tsr3-201ENSMUST00000063574 1192 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Col1a1P11087 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Col1a1P11087 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
Col1a1P11087 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Col1a1P11087 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Col1a1P11087 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Col1a1P11087 Arl4aos-201ENSMUST00000135883 748 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Col1a1P11087 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Col1a1P11087 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC21.74■■□□□ 1.07
Col1a1P11087 Glipr2-201ENSMUST00000030202 2320 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Col1a1P11087 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Col1a1P11087 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC21.74■■□□□ 1.07
Col1a1P11087 Prkra-201ENSMUST00000002808 1614 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Col1a1P11087 Ptov1-201ENSMUST00000046575 1883 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Col1a1P11087 Adrb3-202ENSMUST00000117565 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Col1a1P11087 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC21.73■■□□□ 1.07
Col1a1P11087 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Col1a1P11087 Eml4-201ENSMUST00000049503 5109 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
Col1a1P11087 Gm5577-203ENSMUST00000153372 815 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Col1a1P11087 Gm14968-201ENSMUST00000155528 769 ntTSL 3 BASIC21.73■■□□□ 1.07
Col1a1P11087 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Col1a1P11087 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
Col1a1P11087 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
Col1a1P11087 Hebp1-201ENSMUST00000045855 1058 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Col1a1P11087 Hist1h2aj-201ENSMUST00000091710 352 ntBASIC21.73■■□□□ 1.07
Col1a1P11087 Cyb5a-204ENSMUST00000160180 1363 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Col1a1P11087 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Col1a1P11087 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC21.73■■□□□ 1.07
Col1a1P11087 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Col1a1P11087 Gm6209-202ENSMUST00000194629 1506 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Col1a1P11087 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Col1a1P11087 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Col1a1P11087 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Col1a1P11087 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
Col1a1P11087 Chst12-201ENSMUST00000043050 2331 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Col1a1P11087 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Col1a1P11087 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Col1a1P11087 Map2k1-201ENSMUST00000005066 2436 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Col1a1P11087 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC21.71■■□□□ 1.07
Col1a1P11087 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Col1a1P11087 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Col1a1P11087 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Col1a1P11087 Atp5d-203ENSMUST00000105367 1410 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
Col1a1P11087 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
Col1a1P11087 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
Col1a1P11087 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Col1a1P11087 Mir142hg-201ENSMUST00000123700 269 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Col1a1P11087 1810062O18Rik-202ENSMUST00000128848 745 ntTSL 3 BASIC21.71■■□□□ 1.07
Col1a1P11087 Gm6728-201ENSMUST00000178117 1065 ntBASIC21.71■■□□□ 1.07
Col1a1P11087 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Col1a1P11087 Pfdn6-201ENSMUST00000025163 807 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Col1a1P11087 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
Col1a1P11087 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Col1a1P11087 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Col1a1P11087 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Col1a1P11087 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Col1a1P11087 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Col1a1P11087 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Col1a1P11087 Cdpf1-204ENSMUST00000144067 761 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
Col1a1P11087 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Col1a1P11087 Tpsg1-202ENSMUST00000160377 1040 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Col1a1P11087 Ddah2-204ENSMUST00000174493 1254 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Col1a1P11087 AC159205.6-201ENSMUST00000224935 887 ntBASIC21.7■■□□□ 1.06
Col1a1P11087 Tpsg1-201ENSMUST00000024999 1186 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Col1a1P11087 Inmt-201ENSMUST00000003569 1077 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Col1a1P11087 Glrx5-201ENSMUST00000021522 2925 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
Col1a1P11087 Dtnb-210ENSMUST00000173199 2820 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
Col1a1P11087 Siah2-201ENSMUST00000070368 2511 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Retrieved 100 of 76,532 protein–RNA pairs in 33.3 ms