Protein–RNA interactions for Protein: O35492

Clk3, Dual specificity protein kinase CLK3, mousemouse

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk3O35492 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Clk3O35492 Cdv3-201ENSMUST00000035484 3387 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Clk3O35492 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Clk3O35492 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Clk3O35492 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Clk3O35492 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Clk3O35492 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC17.56■□□□□ 0.4
Clk3O35492 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Clk3O35492 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Clk3O35492 Uhmk1-202ENSMUST00000123399 7775 ntTSL 5 BASIC17.56■□□□□ 0.4
Clk3O35492 Gm32699-201ENSMUST00000221728 1988 ntBASIC17.56■□□□□ 0.4
Clk3O35492 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Clk3O35492 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Clk3O35492 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Clk3O35492 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Clk3O35492 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC17.56■□□□□ 0.4
Clk3O35492 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Clk3O35492 Gm21949-201ENSMUST00000182006 2369 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
Clk3O35492 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Clk3O35492 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Clk3O35492 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
Clk3O35492 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Clk3O35492 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
Clk3O35492 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Clk3O35492 Txnrd2-203ENSMUST00000115606 1905 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
Clk3O35492 Gm45606-201ENSMUST00000209836 2795 ntBASIC17.55■□□□□ 0.4
Clk3O35492 Gm45141-201ENSMUST00000206502 1888 ntBASIC17.55■□□□□ 0.4
Clk3O35492 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC17.55■□□□□ 0.4
Clk3O35492 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
Clk3O35492 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Clk3O35492 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Clk3O35492 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Clk3O35492 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
Clk3O35492 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
Clk3O35492 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Clk3O35492 Ankrd9-202ENSMUST00000128353 2577 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Clk3O35492 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Clk3O35492 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Clk3O35492 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Clk3O35492 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Clk3O35492 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
Clk3O35492 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Clk3O35492 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Clk3O35492 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Clk3O35492 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Clk3O35492 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Clk3O35492 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Clk3O35492 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Clk3O35492 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
Clk3O35492 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC17.53■□□□□ 0.4
Clk3O35492 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
Clk3O35492 Kat14-201ENSMUST00000028911 3801 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Clk3O35492 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
Clk3O35492 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Clk3O35492 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
Clk3O35492 Csnk2a2-203ENSMUST00000212214 6779 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Clk3O35492 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
Clk3O35492 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Clk3O35492 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
Clk3O35492 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Clk3O35492 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Clk3O35492 Rasl10b-202ENSMUST00000108140 3156 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
Clk3O35492 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC17.52■□□□□ 0.4
Clk3O35492 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Clk3O35492 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC17.52■□□□□ 0.4
Clk3O35492 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Clk3O35492 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Clk3O35492 Tgfb1-201ENSMUST00000002678 2175 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Clk3O35492 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Clk3O35492 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC17.52■□□□□ 0.39
Clk3O35492 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Clk3O35492 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Clk3O35492 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
Clk3O35492 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Clk3O35492 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Clk3O35492 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Clk3O35492 Gm14281-201ENSMUST00000121700 1294 ntBASIC17.51■□□□□ 0.39
Clk3O35492 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Clk3O35492 Plac9b-203ENSMUST00000184142 1040 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Clk3O35492 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC17.51■□□□□ 0.39
Clk3O35492 Snrnp70-201ENSMUST00000074575 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Clk3O35492 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Clk3O35492 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Clk3O35492 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
Clk3O35492 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Clk3O35492 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Clk3O35492 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Clk3O35492 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Clk3O35492 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Clk3O35492 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Clk3O35492 Dmtn-207ENSMUST00000228001 2437 ntBASIC17.5■□□□□ 0.39
Clk3O35492 Rnf26-208ENSMUST00000185479 2964 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Clk3O35492 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Clk3O35492 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Clk3O35492 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Clk3O35492 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC17.5■□□□□ 0.39
Clk3O35492 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC17.5■□□□□ 0.39
Clk3O35492 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Clk3O35492 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC17.5■□□□□ 0.39
Clk3O35492 Gm9988-201ENSMUST00000069786 435 ntBASIC17.5■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 38.1 ms